GtRNAdb

tRNAscan-SE Analysis of Anolis carolinensis (lizard) (Broad AnoCar2.0 May 2010)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA210
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs211


Intron Summary

tRNAs with introns
11
Arg
TCT
2
Leu
CAA
2
Ile
TAT
1
Tyr
GTA
6


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
12
GGC
 
CGC
3
TGC
6
21
GlyACC
 
GCC
7
CCC
2
TCC
8
17
ProAGG
3
GGG
1
CGG
2
TGG
3
9
ThrAGT
4
GGT
 
CGT
1
TGT
3
8
ValAAC
5
GAC
 
CAC
3
TAC
2
10

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
5
GGA
 
CGA
2
TGA
1
ACT
 
GCT
5
 
 
 
 
13
ArgACG
4
GCG
 
CCG
1
TCG
3
 
 
 
 
CCT
3
TCT
3
14
LeuAAG
4
GAG
 
CAG
4
TAG
3
 
 
 
 
CAA
2
TAA
2
15

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
5
 
 
 
 
5
AsnATT
 
GTT
10
 
 
 
 
10
Lys 
 
 
 
CTT
6
TTT
5
11
AspATC
 
GTC
8
 
 
 
 
8
Glu 
 
 
 
CTC
5
TTC
7
12
HisATG
 
GTG
5
 
 
 
 
5
Gln 
 
 
 
CTG
5
TTG
3
8

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
6
GAT
 
 
 
TAT
1
7
Met 
 
 
 
CAT
12
 
 
12
TyrATA
 
GTA
6
 
 
 
 
6
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
12
 
 
 
 
12
Trp 
 
 
 
CCA
7
 
 
7
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.