GtRNAdb

tRNAscan-SE Analysis of Acholeplasma laidlawii PG 8A

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tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 26 1203405 1203330 Ala TGC aataaaaatt atataaaatt0 0 93.92 76.7017.22 Both
chr 6 78593 78668 Ala TGC ttaaattgtt gtttacgatt0 0 94.04 76.9217.12 Both
 
chr 29 1196879 1196803 Arg ACG cactttattt tttaatgatt0 0 81.60 61.0120.59 Both
chr 14 429859 429935 Arg CCG tttttcactt ttatttattt0 0 65.64 34.4631.18 Both
chr 33 965090 965014 Arg TCT gaataagtgt tcatggaatt0 0 91.20 66.1825.02 Both
 
chr 27 1200174 1200098 Asn GTT tcaattgtaa ctttttttat0 0 98.72 79.3319.39 Both
 
chr 11 79115 79190 Asp GTC aatttaaaac ttttagtggc0 0 77.06 56.1420.92 Both
 
chr 32 1185530 1185456 Cys GCA tagcgtgttt aagaaatctt0 0 67.72 47.2520.47 Both
 
chr 23 1333645 1333571 Gln TTG aataaaatgt tttttataaa0 0 77.26 53.0124.25 Both
 
chr 28 1196963 1196888 Glu TTC cgcattaagt ctttatttgc0 0 77.52 51.8725.65 Eufind
chr 21 1396762 1396687 Glu TTC ctccgccatt ttaattattg0 0 79.52 53.8725.65 Eufind
 
chr 36 301013 300939 Gly GCC aaagcaacat gtaaataata0 0 55.52 25.4230.10 Eufind
chr 31 1196659 1196585 Gly TCC cattttactt ttaatttaca0 0 64.35 41.6022.75 Eufind
 
chr 22 1333744 1333669 His GTG gcaaagtatg taattgcgaa0 0 73.22 56.8016.42 Both
 
chr 25 1203504 1203428 Ile GAT ataataagtg ttaataaata0 0 101.29 80.7920.50 Both
 
chr 17 512174 512257 Leu CAA ctgcttatat atcttaaagt0 0 71.26 45.3425.92 Both
chr 13 257049 257134 Leu GAG tataaggtat taaaattata0 0 63.71 27.8435.87 Both
chr 5 78484 78570 Leu TAA ataatttaat ctaaaaaatt0 0 75.97 44.2931.68 Both
chr 24 1333543 1333459 Leu TAG cactatccat tattgaattg0 0 76.21 51.3024.91 Both
 
chr 18 892220 892295 Lys CTT tataaaaaat tttatatatg0 0 87.81 64.5923.22 Both
chr 4 78393 78468 Lys TTT ccactacaat cttttataat0 0 91.65 65.3426.31 Both
 
chr 7 78714 78790 Met CAT accaatatat gtacggaccc0 0 84.33 68.5015.83 Both
chr 10 79023 79099 Met CAT aacaacatat aataaaattt0 0 87.76 58.9728.79 Both
chr 8 78795 78871 Met CAT ctaccagtac gtattaactt0 0 96.08 72.1223.96 Both
 
chr 12 79198 79273 Phe GAA ccattttagt cttatgaact0 0 81.41 67.0714.34 Both
 
chr 30 1196744 1196668 Pro TGG acaaagtaat ttttacttgc0 0 86.41 64.3722.04 Both
 
chr 20 1396855 1396765 Ser GCT tgcctacaat ttggcccgtt0 0 56.67 29.9426.73 Both
chr 15 459789 459877 Ser GGA tccttcacac taatttaaca0 0 66.78 27.7639.02 Both
chr 34 809453 809362 Ser TGA atattttttt tactaacaaa0 0 27.73 14.7013.03 Eufind
chr 9 78894 78982 Ser TGA aaataaacgt ctacaatttt0 0 72.22 37.5334.69 Both
 
chr 35 303160 303087 Thr GGT tgttaaattt tttaaaataa0 0 64.99 32.1432.85 Both
chr 3 78310 78385 Thr TGT cactttacaa ctacaatgtc0 0 92.23 74.6217.61 Both
 
chr 19 1335875 1335949 Trp CCA aggcgtgaac tctaataata0 0 56.46 43.9912.47 Both
 
chr 1 73228 73311 Tyr GTA atcaaaaaac ttctaattta0 0 74.68 47.8526.83 Both
 
chr 16 477127 477201 Val GAC aaatttcaac tgttaacatt0 0 83.22 59.0624.16 Both
chr 2 78226 78301 Val TAC accatttttt ctttacaagc0 0 97.70 79.2718.43 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.