GtRNAdb

tRNAscan-SE Analysis of Aeromonas hydrophila ATCC 7966

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> UCSC Genome Browser
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGTTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCCGCGGTTCGATCCCGCGTAGCTCCACCA chr.trna92-AlaGGC Sc: 81.36 GGGGTTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCCGCGGTTCGATCCCGCGTAGCTCCACCA chr.trna91-AlaGGC Sc: 81.36 GGGGTTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCCGCGGTTCGATCCCGCGTAGCTCCACCA chr.trna90-AlaGGC Sc: 81.36 GGGGTTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCCGCGGTTCGATCCCGCGTAGCTCCACCA chr.trna89-AlaGGC Sc: 81.36 GGGGTTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCCGCGGTTCGATCCCGCGTAGCTCCACCA chr.trna88-AlaGGC Sc: 81.36 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCTGCGGTTCGATCCCGCATAGCTCCACCA chr.trna9-AlaTGC Sc: 88.77 GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCTGCGGTTCGATCCCGCATAGCTCCACCA chr.trna53-AlaTGC Sc: 88.77 GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCTGCGGTTCGATCCCGCATAGCTCCACCA chr.trna50-AlaTGC Sc: 88.77

Arg tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCGTAGCTCAGCTGGAtAGAGTACCTGGCTACGAACCAGGTG...........GtCAGAGGTTCGAATCCTCTCGGGCGCACCA chr.trna63-ArgACG Sc: 91.00 GCGCCCGTAGCTCAGCTGGAtAGAGTACCTGGCTACGAACCAGGTG...........GtCAGAGGTTCGAATCCTCTCGGGCGCACCA chr.trna62-ArgACG Sc: 91.00 GCGCCCGTAGCTCAGCTGGAtAGAGTACCTGGCTACGAACCAGGTG...........GtCAGAGGTTCGAATCCTCTCGGGCGCACCA chr.trna61-ArgACG Sc: 91.00 GCGCCCGTAGCTCAGCTGGAtAGAGTACCTGGCTACGAACCAGGTG...........GtCAGAGGTTCGAATCCTCTCGGGCGCACCA chr.trna60-ArgACG Sc: 91.00 GCGCCCGTAGCTCAGCTGGAtAGAGTACCTGGCTACGAACCAGGTG...........GtCAGAGGTTCGAATCCTCTCGGGCGCACCA chr.trna59-ArgACG Sc: 91.00 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCGTAGCTCAGCTGGAtAGAGCGCTGCCCTCCGGAGGCAGAG...........GtCACAGGTTCGAATCCTGTCGGGCGCACCA chr.trna1-ArgCCG Sc: 95.23 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTCCCGTAGCTCAGTAGGAtAGAGCGGTCCCCTCCTAAGGGACAG...........GcCACTGGTTCGACTCCAGTCGGGAGCGCCA chr.trna125-ArgCCT Sc: 79.52 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCTTAGCTCAGTCGGAtAGAGCAACGGCCTTCTAAGCCGTGG...........GtCGCAGGTTCGAATCCTGCAGGGCGCGCCA chr.trna119-ArgTCT Sc: 97.39

Asn tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCCCCGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTAT...........GtCACTGGTTCAAGTCCAGTCGGGGGAGCCA chr.trna20-AsnGTT Sc: 87.36 TCCCTCGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTAT...........GtCACAGGTTCAAGTCCTGTCGAGGGAGCCA chr.trna23-AsnGTT Sc: 85.53 TCCTCCTTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTAT...........GtCACTGGTTCAAGTCCAGTAGGAGGAGCCA chr.trna57-AsnGTT Sc: 85.17 TCCTCCTTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTAT...........GtCACTGGTTCAAGTCCAGTAGGAGGAGCCA chr.trna36-AsnGTT Sc: 85.17 TCCTCCTTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTAT...........GtCACTGGTTCAAGTCCAGTAGGAGGAGCCA chr.trna22-AsnGTT Sc: 85.17

Asp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chr.trna51-AspGTC Sc: 95.34 GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chr.trna43-AspGTC Sc: 95.34 GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chr.trna14-AspGTC Sc: 95.34 GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chr.trna12-AspGTC Sc: 95.34

Cys tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCGCGTTAGCAAAGCGGTT.ATGCAGCGGATTGCAAATCCGTTT...........AGTCCGGTTCGACTCCGGAACGTGCCTCCA chr.trna96-CysGCA Sc: 53.70 GGCGCGTTAGCAAAGCGGTT.ATGCAGCGGATTGCAAATCCGTTT...........AGTCCGGTTCGACTCCGGAACGTGCCTCCA chr.trna100-CysGCA Sc: 53.70

Gln tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGTATCGCCAAGCGGTA.AGGCAGCGGGTTTTGATCTCGCCA...........TtCCTAGGTTCGAATCCTAGTACCCCAGCCA chr.trna26-GlnTTG Sc: 67.44 TGGGGTATCGCCAAGCGGTA.AGGCAGCGGGTTTTGATCTCGCCA...........TcCCTAGGTTCGAATCCTAGTACCCCAGCCA chr.trna30-GlnTTG Sc: 62.85 TGGGGTATCGCCAAGCGGTA.AGGCAGCGGGTTTTGATCTCGCCA...........TcCCTAGGTTCGAATCCTAGTACCCCAGCCA chr.trna28-GlnTTG Sc: 62.85 TGGGGCATCGCCAAGCGGTA.AGGCAGCGGGTTTTGATCTCGCCA...........TaCCTAGGTTCGAATCCTAGTGCCCCAGCCA chr.trna32-GlnTTG Sc: 61.93 TGGGGCATCGCCAAGCGGTA.AGGCAGCGGGTTTTGATCTCGCCA...........TaCCTAGGTTCGAATCCTAGTGCCCCAGCCA chr.trna29-GlnTTG Sc: 61.93

Glu tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GTCCCCTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA chr.trna79-GluTTC Sc: 62.50 GTCCCCTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA chr.trna7-GluTTC Sc: 62.50 GTCCCCTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA chr.trna5-GluTTC Sc: 62.50 GTCCCCTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA chr.trna42-GluTTC Sc: 62.50 GTCCCCTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA chr.trna16-GluTTC Sc: 62.50 GTCCCCTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA chr.trna13-GluTTC Sc: 62.50 GTCCCCTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA chr.trna11-GluTTC Sc: 62.50

Gly tRNAs

>>>>>>>..>>>>..........<<<<......>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAATAGCTCAGTTGGT.A.GAGCA.....CGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA chr.trna99-GlyGCC Sc: 93.74 GCGGGAATAGCTCAGTTGGT.A.GAGCA.....CGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA chr.trna95-GlyGCC Sc: 93.74 GCGGGAATAGCTCAGTTGGT.A.GAGCA.....CGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA chr.trna86-GlyGCC Sc: 93.74 GCGGGAATAGCTCAGTTGGT.A.GAGCA.....CGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA chr.trna85-GlyGCC Sc: 93.74 GCGGGAATAGCTCAGTTGGT.A.GAGCA.....CGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA chr.trna84-GlyGCC Sc: 93.74 GCGGGAATAGCTCAGTTGGT.A.GAGCA.....CGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA chr.trna83-GlyGCC Sc: 93.74 GCGGGAATAGCTCAGTTGGT.A.GAGCA.....CGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA chr.trna82-GlyGCC Sc: 93.74 GCGGGAATAGCTCAGTTGGT.A.GAGCA.....CGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA chr.trna81-GlyGCC Sc: 93.74 GCGGGAATAGCTCAGTTGGT.A.GAGCA.....CGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA chr.trna80-GlyGCC Sc: 93.74 >>.>..>...>>>..........<<<.......>>..>.......<..<<................>>>>>.......<<<<<<..<.<<.... GCTGCCATA.TTCAGTTGGT.A.GAGCAtgatcCGCGCTTGCCAAGGCTGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA chr.trna87-GlyGCC Sc: 30.09 Pseudo >>>>>>>..>>>>..........<<<<......>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTAGTTCAAT.GGT.A.GAACG.....GTAGCTTCCCAAGCTGCAT...........A.CGTGGGTTCGATTCCCATCACCCGCTCCA chr.trna97-GlyCCC Sc: 74.92 >>>>>>>..>>>............<<<......>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGCATCGTATAAT.GGCtA.TTACC.....TCAGCCTTCCAAGCTGATG...........A.TGCGGGTTCGATTCCCGCTGCCCGCTCCA chr.trna98-GlyTCC Sc: 64.85 GCGGGCATCGTATAAT.GGCtA.TTACC.....TCAGCCTTCCAAGCTGATG...........A.TGCGGGTTCGATTCCCGCTGCCCGCTCCA chr.trna47-GlyTCC Sc: 64.85

His tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGCTGTAGCTCAGTTGGTAGAGTCCCGGATTGTGATTCCGGTT...........GtCGTGGGTTCGAGCCCCATCAGCCACCCCA chr.trna2-HisGTG Sc: 80.26 GTGGCTGTAGCTCAGTTGGTAGAGTCCCGGATTGTGATTCCGGTT...........GtCGTGGGTTCGAGCCCCATCAGCCACCCCA chr.trna120-HisGTG Sc: 80.26

Ile tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCGAGTCCACTCAGACCCACCA chr.trna8-IleGAT Sc: 95.89 GGGTCTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCGAGTCCACTCAGACCCACCA chr.trna52-IleGAT Sc: 95.89 GGGTCTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCGAGTCCACTCAGACCCACCA chr.trna49-IleGAT Sc: 95.89

Leu tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>..........<<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGTGGTGGTGGAATTGGTaGACACGCTATCTTGAGGGGGTAGT.GCTCT..........AGGGTGTGCGGGTTCGAGTCCCGC.CCACGGCACCA chr.trna93-LeuGAG Sc: 61.40 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>............<<<...>>>>>.......<<<<<.<<<<<<<.... GCGAAGGTGGCGGAATTGGTaGACGCGCTAGCTTCAGGTGTTAGTGCCCCC..........CGGGTGTGAGGGTTCGAGTCCCTC.TCTTCGCACCA chr.trna40-LeuCAG Sc: 67.52 GCGAAGGTGGCGGAATTGGTaGACGCGCTAGCTTCAGGTGTTAGTGCCCCC..........CGGGTGTGAGGGTTCGAGTCCCTC.TCTTCGCACCA chr.trna38-LeuCAG Sc: 67.52 GCGAAGGTGGCGGAATTGGTaGACGCGCTAGCTTCAGGTGTTAGTGCCCCC..........CGGGTGTGAGGGTTCGAGTCCCTC.TCTTCGCACCA chr.trna3-LeuCAG Sc: 67.52 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>............<<....>>>>>.......<<<<<.<<<<<<<.... GCGAAGGTGGCGGAATTGGTaGACGCGCTAGCTTCAGGTGTTAGTGTCCCA..........CGGATGTGAGGGTTCGAGTCCCTC.TCTTCGCACCA chr.trna41-LeuCAG Sc: 63.52 GCGAAGGTGGCGGAATTGGTaGACGCGCTAGCTTCAGGTGTTAGTGTCCCA..........CGGATGTGAGGGTTCGAGTCCCTC.TCTTCGCACCA chr.trna39-LeuCAG Sc: 63.52 GCGAAGGTGGCGGAATTGGTaGACGCGCTAGCTTCAGGTGTTAGTGTCCCA..........CGGATGTGAGGGTTCGAGTCCCTC.TCTTCGCACCA chr.trna37-LeuCAG Sc: 63.52 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>............<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGAAGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGCGCCCT............AGGCGTGAGAGTTCGAGTCTCTC.CTTCCGCACCA chr.trna34-LeuTAG Sc: 78.55 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>..............<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCGGGTGGCGAAATCGGTaGACGCAGCGGATTCAAAATCCGCC.GGT..GAATa.......ACCGTGTCGGTTCGAGTCCGAC.CCCGGGCACCA chr.trna64-LeuCAA Sc: 75.64 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>............<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCGAGTGGTGAAATCGGTaGACACAAGGGATTTAAAATCCCTC.GACG.TTCG.......CGTCGTGCCGGTTCGATTCCGGC.CTCGGGCACCA chr.trna101-LeuTAA Sc: 75.24

Lys tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTCTTAATCAATTG...........GtCGTAGGTTCGATCCCTACACGACCCACCA chr.trna67-LysCTT Sc: 91.87 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCTGGTTCGAATCCAGCACGACCCACCA chr.trna77-LysTTT Sc: 96.39 GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCTGGTTCGAATCCAGCACGACCCACCA chr.trna75-LysTTT Sc: 96.39 GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCTGGTTCGAATCCAGCACGACCCACCA chr.trna73-LysTTT Sc: 96.39 GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCTGGTTCGAATCCAGCACGACCCACCA chr.trna71-LysTTT Sc: 96.39 GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCTGGTTCGAATCCAGCACGACCCACCA chr.trna69-LysTTT Sc: 96.39 GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCTGGTTCGAATCCAGCACGACCCACCA chr.trna65-LysTTT Sc: 96.39

Met tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<.... GGCTATGTAGCTCAGTT.GGTtAGAGCATCGCACTCATAATGCGGGG...........GtCACAGGTTCGAATCCCGTCATAGCCACCA chr.trna33-MetCAT Sc: 93.33 GGCTATGTAGCTCAGTT.GGTtAGAGCATCGCACTCATAATGCGGGG...........GtCACAGGTTCGAATCCCGTCATAGCCACCA chr.trna31-MetCAT Sc: 93.33 GGCTATGTAGCTCAGTT.GGTtAGAGCATCGCACTCATAATGCGGGG...........GtCACAGGTTCGAATCCCGTCATAGCCACCA chr.trna27-MetCAT Sc: 93.33 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... GGCCCCTTAGCTCAGTT.GGTcAGAGCAGTCGACTCATAATCGATTG...........GtCGTGGGTTCAAGTCCCCCAGGGGCCACCA chr.trna15-MetCAT Sc: 90.81 .>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGCTcGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCCCCCGCAACCA chr.trna111-MetCAT Sc: 86.71 CGCGGGGTGGAGCAGCTcGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCCCCCGCAACCA chr.trna110-MetCAT Sc: 86.71 CGCGGGGTGGAGCAGCTcGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCCCCCGCAACCA chr.trna109-MetCAT Sc: 86.71 CGCGGGGTGGAGCAGCTcGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCCCCCGCAACCA chr.trna108-MetCAT Sc: 86.71 CGCGGGGTGGAGCAGCTcGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCCCCCGCAACCA chr.trna107-MetCAT Sc: 86.71 CGCGGGGTGGAGCAGCTcGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCCCCCGCAACCA chr.trna106-MetCAT Sc: 86.71 CGCGGGGTGGAGCAGCTcGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCCCCCGCAACCA chr.trna105-MetCAT Sc: 86.71 CGCGGGGTGGAGCAGCAtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCCCCCGCAACCA chr.trna94-MetCAT Sc: 84.66 CGCGGGGTGGAGCAGCCcGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTCAGTTCAAATCTGGCCCCCGCAACCA chr.trna104-MetCAT Sc: 81.80

Phe tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCAGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGT...........GtCGGCGGTTCGATTCCGTCTCTGGGCACCA chr.trna56-PheGAA Sc: 89.80 GCCCAGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGT...........GtCGGCGGTTCGATTCCGTCTCTGGGCACCA chr.trna54-PheGAA Sc: 89.80 GCCCAGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGT...........GtCGGCGGTTCGATTCCGTCTCTGGGCACCA chr.trna35-PheGAA Sc: 89.80

Pro tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGTGTGTAGCGCAGCCaGGTAGCGCATCTGCATGGGGTGTAGAGG...........GtCGGAGGTTCGAATCCTCTCACACCGACCA chr.trna25-ProGGG Sc: 74.34 CGGTGTGTAGCGCAGCCaGGTAGCGCATCTGCATGGGGTGTAGAGG...........GtCGGAGGTTCGAATCCTCTCACACCGACCA chr.trna24-ProGGG Sc: 74.34 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGTGTGTAGCGCAGCTtGGTAGCGCACTTCGTTCGGGACGAAGGG...........GtCGGAGGTTCGAATCCTCTCACACCGACCA chr.trna44-ProCGG Sc: 89.45 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGTGATTAGCGCAGCCcGGTAGCGCATCTGGTTTGGGACCAGAGG...........GtCAAAGGTTCGAATCCTTTATCACCGACCA chr.trna4-ProTGG Sc: 86.34 CGGTGATTAGCGCAGCCcGGTAGCGCATCTGGTTTGGGACCAGAGG...........GtCAAAGGTTCGAATCCTTTATCACCGACCA chr.trna118-ProTGG Sc: 86.34

SeC tRNAs

>>>>>.....>>..........<<...>>>>>.......<<<<<....>>>>........<<<<...>>>>>.......<<<<<..<<<<<.... GGAAGCTGATGGGGTCtGGTgGCCTCCTCGGTCTTCAAAACCGATGagAGCCGAGAa...GGCTTtGGCAGGTTCGATTCCTGCCTCTTCC.... chr.trna21-SeC(p)TCA Sc: 32.53

Ser tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>............<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGTGAGGTGTCCGAGTGGCtgA.AGGAGCACGCCTGGAAAGTGTGT.ATACG..GCAA......CGTAT.CGAGGGTTCGAATCCCTC..CCTCACCGCCA chr.trna19-SerGGA Sc: 68.20 GGTGAGGTGTCCGAGTGGCtgA.AGGAGCACGCCTGGAAAGTGTGT.ATACG..GCAA......CGTAT.CGAGGGTTCGAATCCCTC..CCTCACCGCCA chr.trna121-SerGGA Sc: 68.20 GGTGAGGTGTCCGAGTGGCtgA.AGGAGCACGCCTGGAAAGTGTGT.ATACG..GCAA......CGTAT.CGAGGGTTCGAATCCCTC..CCTCACCGCCA chr.trna103-SerGGA Sc: 68.20 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>............<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGAGATGCCGGAGTGGCcgA.ACGGGATTGACTCGAAATCAATTGTGGCA..GCAA......TGCCACCCAGGGTTCGAATCCCTG..TCTCTCCGCCA chr.trna18-SerCGA Sc: 68.59 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>.>..........<.<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGGGGTGGCAGAGCGGCtgA.ATGCACCGGTCTTGAAAACCGGCGATGGGC..........GACCATCCGTGGGTTCAAATCCCAC..CTCCTCCGCCA chr.trna17-SerTGA Sc: 68.13 GGAGGGGTGGCAGAGCGGCtgA.ATGCACCGGTCTTGAAAACCGGCGATGGGC..........GACCATCCGTGGGTTCAAATCCCAC..CTCCTCCGCCA chr.trna102-SerTGA Sc: 68.13 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>..........<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGAGGTGGCCGAGAGGCtgA.AGGCGCTCCCCTGCTAAGGGAGT.ATGCGGCTTATa...CCCGCAT.CGGGGGTTCGAATCCCCC..CTTCTCCGCCA chr.trna58-SerGCT Sc: 71.74

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTGATATGGCTCAGTTGGTAGAGCGCATCCTTGGTAAGGATGAG...........GtCCCCAGTTCGACTCTGGGTATCAGCACCA chr.trna6-ThrGGT Sc: 89.28 GCTGATATGGCTCAGTTGGTAGAGCGCATCCTTGGTAAGGATGAG...........GtCCCCAGTTCGACTCTGGGTATCAGCACCA chr.trna10-ThrGGT Sc: 89.28 >>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GCCGGTATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAG...........GtCGGGGGTTCGACTCCTCTTACCGGCACCA chr.trna124-ThrCGT Sc: 90.80 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<.... GCCGGCTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAG...........GtCACCAGTTCGATTCCGGTAGCCGGCACCA chr.trna55-ThrTGT Sc: 92.56

Trp tRNAs

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... AGGGGCGTAGTTCgAATTGGTAGAACAGCGGTCTCCAAAACCGATG...........GtTGCGGGTTCGAGTCCTGCCGCCCCTGCCA chr.trna48-TrpCCA Sc: 74.57 AGGGGCGTAGTTCcAATTGGTAGAACAGCGGTCTCCAAAACCGATG...........GtTGCGGGTTCGAGTCCTGCCGCCCCTGCCA chr.trna45-TrpCCA Sc: 74.57

Tyr tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>.>.........<.<...>>>>>.......<<<<<<<<<<<<.... GGAGGGGTTCCCGAGTGGCcaA.AGGGATCAGACTGTAAATCTGACGGCTC.......TGCCTtCGAAGGTTCGAATCCTTCTCCCTCCACCA chr.trna122-TyrGTA Sc: 67.45 GGAGGGGTTCCCGAGCGGCcaA.AGGGATCAGACTGTAAATCTGACGGCTC.......TGCCTtCGAAGGTTCGAATCCTTCTCCCTCCACCA chr.trna46-TyrGTA Sc: 66.59 GGAGGGGTTCCCGAGCGGCcaA.AGGGATCAGACTGTAAATCTGACGGCTC.......TGCCTtCGAAGGTTCGAATCCTTCTCCCTCCACCA chr.trna128-TyrGTA Sc: 66.59 GGAGGGGTTCCCGAGCGGCcaA.AGGGATCAGACTGTAAATCTGACGGCTC.......TGCCTtCGAAGGTTCGAATCCTTCTCCCTCCACCA chr.trna127-TyrGTA Sc: 66.59 GGAGGGGTTCCCGAGCGGCcaA.AGGGATCAGACTGTAAATCTGACGGCTC.......TGCCTtCGAAGGTTCGAATCCTTCTCCCTCCACCA chr.trna126-TyrGTA Sc: 66.59 GGAGGGGTTCCCGAGCGGCcaA.AGGGATCAGACTGTAAATCTGACGGCTC.......TGCCTtCGAAGGTTCGAATCCTTCTCCCTCCACCA chr.trna123-TyrGTA Sc: 66.59

Val tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....................>>>>>.......<<<<<<<<<<<<.... GCGTCCTTAGCTCAGCTGGTtAGAGCACCACCTTGACATGGTGGGG...............GtCGGTGGTTCGAATCCACTAGGACGCACCA chr.trna113-ValGAC Sc: 95.18 GGGTTTATAGCTCAGTTGGTtAGAGCACTACCTTGACATGGTAGGG...............GtCGTTGGTTCGAATCCAATTAAACCCACCA chr.trna116-ValGAC Sc: 91.82 GGGTTTATAGCTCAGTTGGTtAGAGCACTACCTTGACATGGTAGGG...............GtCGTTGGTTCGAATCCAATTAAACCCACCA chr.trna112-ValGAC Sc: 91.82 GCGTCCTTAGCTCAGCTGGTtAGAGCATCACCTTGACATGGTGGGG...............GtCGGTGGTTCGAATCCACTAGGACGCACCA chr.trna117-ValGAC Sc: 90.51 GCGTCCTTAGCTCAGCTGGTtAGAGCATCACCTTGACATGGTGGGG...............GtCGGTGGTTCGAATCCACTAGGACGCACCA chr.trna114-ValGAC Sc: 90.51 >.>.>>>..>.>>.........<<.<.>>.>>.......<<.<<....................>>>>>.......<<<<<<<<.<.<.... G.GCTTATAGCTCAGTTGGTtAGAACAGTACTTTGACATGGCGTAGGCGAt..........GtCGTTGGTTCGAATCCAATTGAACACA... chr.trna115-ValGAC Sc: 31.36 Pseudo >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....................>>>>>.......<<<<<<<<<<<<.... GGTCGTTTAGCTCAGCTGGG.AGAGCACCTCCCTTACAAGGAGGGG...............GtCACTGGTTCGAGCCCAGTAACGACCACCA chr.trna68-ValTAC Sc: 94.81 GGTCGTTTAGCTCAGCTGGG.AGAGCACCTCCCTTACAAGGAGGGG...............GtCACTGGTTCGATCCCAGTAACGACCACCA chr.trna78-ValTAC Sc: 93.87 GGTCGTTTAGCTCAGCTGGG.AGAGCACCTCCCTTACAAGGAGGGG...............GtCACTGGTTCGATCCCAGTAACGACCACCA chr.trna76-ValTAC Sc: 93.87 GGTCGTTTAGCTCAGCTGGG.AGAGCACCTCCCTTACAAGGAGGGG...............GtCACTGGTTCGATCCCAGTAACGACCACCA chr.trna74-ValTAC Sc: 93.87 GGTCGTTTAGCTCAGCTGGG.AGAGCACCTCCCTTACAAGGAGGGG...............GtCACTGGTTCGATCCCAGTAACGACCACCA chr.trna72-ValTAC Sc: 93.87 GGTCGTTTAGCTCAGCTGGG.AGAGCACCTCCCTTACAAGGAGGGG...............GtCACTGGTTCGATCCCAGTAACGACCACCA chr.trna70-ValTAC Sc: 93.87 GGTCGCTTAGCTCAGCTGGG.AGAGCACCTCCCTTACAAGGAGGGG...............GtCACTGGTTCGATCCCAGTAGCGACCACCA chr.trna66-ValTAC Sc: 93.75

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.