GtRNAdb

tRNAscan-SE Analysis of Aeromonas hydrophila ATCC 7966

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 29246 29322 Arg CCG cgacagcgta tcaaaagtgc0 0 95.23 73.5521.68 Both
chr 2 29373 29448 His GTG aacagctgtg ttttacagct0 0 80.26 59.4920.77 Both
chr 3 29469 29554 Leu CAG tgtcaggtat tacttgctgt0 0 67.52 41.7325.79 Both
chr 4 29628 29704 Pro TGG tttaaagcct cattctgaaa0 0 86.34 58.9427.40 Both
chr 5 86944 87019 Glu TTC atgattttgg cttctcttct0 0 62.50 34.2928.21 Both
chr 6 90487 90562 Thr GGT cggttagtgt ttaaatatca0 0 89.28 58.8130.47 Both
chr 7 165116 165191 Glu TTC acaaatccgg cttctcttct0 0 62.50 34.2928.21 Both
chr 8 216523 216599 Ile GAT tacacgaagt cttcgattac0 0 95.89 72.3123.58 Both
chr 9 216610 216685 Ala TGC cttcgattac taatccgtac0 0 88.77 67.0521.72 Both
chr 10 220152 220227 Thr GGT cggttagtgt ttattgaagt0 0 89.28 58.8130.47 Both
chr 11 351690 351765 Glu TTC acaaatccgg cttctcttct0 0 62.50 34.2928.21 Both
chr 12 355180 355256 Asp GTC accagacagc ctacttaaga0 0 95.34 76.8618.48 Both
chr 13 805590 805665 Glu TTC acaaatccgg cttctcttct0 0 62.50 34.2928.21 Both
chr 14 809122 809198 Asp GTC accagacagc ctaatttgaa0 0 95.34 76.8618.48 Both
chr 15 897169 897245 Met CAT cagtatcaat ttttcagaca0 0 90.81 74.8815.93 Both
chr 16 934767 934842 Glu TTC acaaatccgg cttctcttct0 0 62.50 34.2928.21 Both
chr 17 1210105 1210192 Ser TGA gcactgtcgc tttattcagc0 0 68.13 40.4227.71 Both
chr 18 1432952 1433041 Ser CGA gatgccccgt tcttcaaggc0 0 68.59 27.2941.30 Both
chr 19 1989214 1989301 Ser GGA atcaaaattt aataaaacaa0 0 68.20 31.5836.62 Both
chr 20 2702867 2702942 Asn GTT tgcctgatgt atctcctcac0 0 87.36 61.5525.81 Both
chr 21 2791529 2791616 SeC(p) TCA tggccattgc gccaaatttc0 0 32.53 0.000.00 Eufind
chr 22 2829543 2829618 Asn GTT gacaggcaat attccctcgt0 0 85.17 57.2127.96 Both
chr 23 2829621 2829696 Asn GTT aggagccaat cattcgaaag0 0 85.53 58.5926.94 Both
chr 24 2900868 2900944 Pro GGG ctgactccgt aattccccga0 0 74.34 51.2323.11 Both
chr 25 3162154 3162230 Pro GGG ctgacctcgt atttccccga0 0 74.34 51.2323.11 Both
chr 26 3566154 3566228 Gln TTG agtcagtgat tctcctgaac0 0 67.44 36.8430.60 Both
chr 27 3571935 3572011 Met CAT aagcaaggtt tctctagttg0 0 93.33 78.9214.41 Both
chr 28 3572020 3572094 Gln TTG catctctagt ttatttcagt0 0 62.85 32.2530.60 Both
chr 29 3572241 3572315 Gln TTG gcatcgctgt tttttaaaag0 0 61.93 31.2330.70 Both
chr 30 3572357 3572431 Gln TTG gcattgctgt ttattctgtt0 0 62.85 32.2530.60 Both
chr 31 3572470 3572546 Met CAT gacaacaaac tttttgaaaa0 0 93.33 78.9214.41 Both
chr 32 3572592 3572666 Gln TTG agaacactgt tttttgcttg0 0 61.93 31.2330.70 Both
chr 33 3572703 3572779 Met CAT tgcacaagaa ttactcctgc0 0 93.33 78.9214.41 Both
chr 34 3572788 3572871 Leu TAG cattactcct tcaaaagcag0 0 78.55 49.1229.43 Both
chr 35 3894370 3894445 Phe GAA gcgcgccgtt caattcctcc0 0 89.80 64.9124.89 Both
chr 36 3894450 3894525 Asn GTT gcaccacaat aatttgaaaa0 0 85.17 57.2127.96 Both
chr 37 4234485 4234570 Leu CAG ccgcagtgat tactgcaaca0 0 63.52 40.7622.76 Both
chr 38 4234626 4234711 Leu CAG acccgaatgt tgcttctcca0 0 67.52 41.7325.79 Both
chr 39 4234756 4234841 Leu CAG aacacaatgt tgctttatcc0 0 63.52 40.7622.76 Both
chr 40 4234887 4234972 Leu CAG aacccgatgt tgcttctggc0 0 67.52 41.7325.79 Both
chr 41 4235044 4235129 Leu CAG aaatcagtgt ttcattatgc0 0 63.52 40.7622.76 Both
chr 42 4701129 4701054 Glu TTC acaaatccgg catctcttct0 0 62.50 34.2928.21 Both
chr 43 4697596 4697520 Asp GTC accagacagc ctaacaagaa0 0 95.34 76.8618.48 Both
chr 44 4579934 4579858 Pro CGG ccgcagacat cattagaaaa0 0 89.45 63.0926.36 Both
chr 45 4526386 4526310 Trp CCA cgtttgttgc tttttcagag0 0 74.57 55.8418.73 Both
chr 46 4476261 4476177 Tyr GTA tttatgtagc tatttctctg0 0 66.59 40.1026.49 Both
chr 47 4476138 4476064 Gly TCC ttagagaaat agatgctgat0 0 64.85 36.4228.43 Eufind
chr 48 4474654 4474578 Trp CCA tttcttatgc tatacctcgt0 0 74.57 55.8418.73 Both
chr 49 4452828 4452752 Ile GAT tacacgaagt cttcgattac0 0 95.89 72.3123.58 Both
chr 50 4452741 4452666 Ala TGC cttcgattac taatccgtac0 0 88.77 67.0521.72 Both
chr 51 4449246 4449170 Asp GTC accagacagc ctacttaaga0 0 95.34 76.8618.48 Both
chr 52 4369806 4369730 Ile GAT tacacgaagt cttcgattac0 0 95.89 72.3123.58 Both
chr 53 4369719 4369644 Ala TGC cttcgattac taatccgtac0 0 88.77 67.0521.72 Both
chr 54 4268924 4268849 Phe GAA tagcgcccac aattttggtg0 0 89.80 64.9124.89 Both
chr 55 4268796 4268721 Thr TGT tttaaagtgt tttgcccaga0 0 92.56 75.3417.22 Both
chr 56 4268717 4268642 Phe GAA ggcaccattt caatcaaggc0 0 89.80 64.9124.89 Both
chr 57 4268596 4268521 Asn GTT gatagttaat attcaaaagc0 0 85.17 57.2127.96 Both
chr 58 4142268 4142176 Ser GCT ccccgcaaac tttgcgcccg0 0 71.74 47.2524.49 Both
chr 59 4142172 4142096 Arg ACG tccgccattt tattagactc0 0 91.00 71.0020.00 Both
chr 60 4141996 4141920 Arg ACG ttaaatcagg tttaaagcaa0 0 91.00 71.0020.00 Both
chr 61 4141893 4141817 Arg ACG aattttatga ttttgaaagc0 0 91.00 71.0020.00 Both
chr 62 4141788 4141712 Arg ACG aagtttgtga tattgaaagc0 0 91.00 71.0020.00 Both
chr 63 4141683 4141607 Arg ACG aagttgatga tatagaagac0 0 91.00 71.0020.00 Both
chr 64 4129749 4129664 Leu CAA cctcgcagtt tcaaattcaa0 0 75.64 47.2428.40 Both
chr 65 4069872 4069797 Lys TTT gtcgtggtga ttctctccac0 0 96.39 73.8322.56 Both
chr 66 4069765 4069690 Val TAC agcattccca gttttaaact0 0 93.75 69.6824.07 Both
chr 67 4069641 4069566 Lys CTT aagtcggtgt atctggccac0 0 91.87 69.3422.53 Both
chr 68 4069544 4069469 Val TAC agaattccca agtttgtaaa0 0 94.81 70.8323.98 Both
chr 69 4069445 4069370 Lys TTT tgatttagat ttatttcaag0 0 96.39 73.8322.56 Both
chr 70 4069352 4069277 Val TAC aagaatccca agtttgtaaa0 0 93.87 69.8923.98 Both
chr 71 4069254 4069179 Lys TTT tgatttagat tcatttcaga0 0 96.39 73.8322.56 Both
chr 72 4069162 4069087 Val TAC cagaatccca agtttgtaaa0 0 93.87 69.8923.98 Both
chr 73 4069062 4068987 Lys TTT tgatttagat tcatttcaga0 0 96.39 73.8322.56 Both
chr 74 4068970 4068895 Val TAC cagaatccca agtttgtaaa0 0 93.87 69.8923.98 Both
chr 75 4068871 4068796 Lys TTT tgatttagat tcatttcaag0 0 96.39 73.8322.56 Both
chr 76 4068778 4068703 Val TAC aagaatccca agtttgtaaa0 0 93.87 69.8923.98 Both
chr 77 4068680 4068605 Lys TTT tgatttagat tcatttcaag0 0 96.39 73.8322.56 Both
chr 78 4068587 4068512 Val TAC aagaatccca gattgaaaaa0 0 93.87 69.8923.98 Both
chr 79 3955008 3954933 Glu TTC acaaatccgg cttctcttct0 0 62.50 34.2928.21 Both
chr 80 3882630 3882555 Gly GCC taaggtagtt aaaagtttgc0 0 93.74 68.4125.33 Both
chr 81 3882529 3882454 Gly GCC atgttccgat atcatcagca0 0 93.74 68.4125.33 Both
chr 82 3882420 3882345 Gly GCC acctaatgtt aaaatttgta0 0 93.74 68.4125.33 Both
chr 83 3882320 3882245 Gly GCC atattccgat atcacttgca0 0 93.74 68.4125.33 Both
chr 84 3882220 3882145 Gly GCC acatcctgtt aaaatttgta0 0 93.74 68.4125.33 Both
chr 85 3882120 3882045 Gly GCC acattccgtt atcacttgca0 0 93.74 68.4125.33 Both
chr 86 3882020 3881945 Gly GCC acatcctgtt atctctcttc0 0 93.74 68.4125.33 Both
chr 87 3881881 3881802 Pseudo GCC caatacaatc atctctcttc0 0 30.09 41.39-11.30 Eufind
chr 88 3876267 3876192 Ala GGC gaggtgagtt aattctcctc0 0 81.36 61.7619.60 Both
chr 89 3876163 3876088 Ala GGC tggaatccaa ggttcctgat0 0 81.36 61.7619.60 Both
chr 90 3876024 3875949 Ala GGC cgacctttgt ttatttagga0 0 81.36 61.7619.60 Both
chr 91 3875900 3875825 Ala GGC tgccgaattt aattcagagt0 0 81.36 61.7619.60 Both
chr 92 3875790 3875715 Ala GGC cacacacatc tctttcgtaa0 0 81.36 61.7619.60 Both
chr 93 3727685 3727601 Leu GAG taagagtttt attaagcagt0 0 61.40 30.9730.43 Both
chr 94 3727508 3727432 Met CAT cgatttcgga aatttcacgc0 0 84.66 59.9224.74 Both
chr 95 3487654 3487579 Gly GCC agcagtacag attttccatg0 0 93.74 68.4125.33 Both
chr 96 3487523 3487450 Cys GCA ttgtcagcat tcttcttgtt0 0 53.70 26.1927.51 Both
chr 97 3414662 3414589 Gly CCC aggccctgac aattccagat0 0 74.92 56.7918.13 Both
chr 98 3414494 3414420 Gly TCC ttgatgccag gccttcatgc0 0 64.85 36.4228.43 Eufind
chr 99 3111461 3111386 Gly GCC ccagaccatt aattcagaca0 0 93.74 68.4125.33 Both
chr 100 3111351 3111278 Cys GCA tcttttgcat tattgacaag0 0 53.70 26.1927.51 Both
chr 101 3111236 3111150 Leu TAA cgattacggt ttaaaatcaa0 0 75.24 39.0336.21 Both
chr 102 2983787 2983700 Ser TGA cacgccgttc tcttcagaaa0 0 68.13 40.4227.71 Both
chr 103 2827066 2826979 Ser GGA accaaaattt aattacaaaa0 0 68.20 31.5836.62 Both
chr 104 2640467 2640391 Met CAT cgacctcaga tctgagttct0 0 81.80 54.2927.51 tRNAscan
chr 105 2640298 2640222 Met CAT aaaatacgga actatttgtg0 0 86.71 61.9724.74 Both
chr 106 2640125 2640049 Met CAT acaattcgga actatttgtg0 0 86.71 61.9724.74 Both
chr 107 2639952 2639876 Met CAT acaattcgga actatttgtg0 0 86.71 61.9724.74 Both
chr 108 2639779 2639703 Met CAT acaattcgga attatttgtg0 0 86.71 61.9724.74 Both
chr 109 2639606 2639530 Met CAT acaattcgga actatttgtg0 0 86.71 61.9724.74 Both
chr 110 2639433 2639357 Met CAT acaattcgga actatttgtg0 0 86.71 61.9724.74 Both
chr 111 2639259 2639183 Met CAT acaattcgga acttcctttc0 0 86.71 61.9724.74 Both
chr 112 2323200 2323124 Val GAC tttgcaaagt cttttccgtg0 0 91.82 64.3527.47 Both
chr 113 2323111 2323035 Val GAC tttccgtgat tcatggaaac0 0 95.18 71.2523.93 Both
chr 114 2323017 2322941 Val GAC aacctgttat taacagtttg0 0 90.51 69.8920.62 Both
chr 115 2322902 2322825 Pseudo GAC gtttgataca gatgtgggtt0 0 31.36 35.41-4.05 Eufind
chr 116 2322819 2322743 Val GAC acacagatgt ctcccctgca0 0 91.82 64.3527.47 Both
chr 117 2322705 2322629 Val GAC tgcgcaccct gattagcaaa0 0 90.51 69.8920.62 Both
chr 118 2027152 2027076 Pro TGG acgagatttt ggtttttcga0 0 86.34 58.9427.40 Both
chr 119 2027039 2026963 Arg TCT tcgaggcaat ttgatgacat0 0 97.39 76.9020.49 Both
chr 120 2026913 2026838 His GTG attttcagtg ttatcccttt0 0 80.26 59.4920.77 Both
chr 121 1955555 1955468 Ser GGA gcaaaaattt aattttaaag0 0 68.20 31.5836.62 Both
chr 122 1702658 1702574 Tyr GTA tcgcacttgt tttcaagtgc0 0 67.45 40.9626.49 Both
chr 123 1702522 1702438 Tyr GTA aatactccgt tcattcaaga0 0 66.59 40.1026.49 Both
chr 124 1458020 1457945 Thr CGT ctagtggcac gtcacgcaat0 0 90.80 75.1915.61 Both
chr 125 1187103 1187027 Arg CCT ccgccacaat tataaaacaa0 0 79.52 51.7327.79 Both
chr 126 1108548 1108464 Tyr GTA tcgcacttgg ttcaagtgca0 0 66.59 40.1026.49 Both
chr 127 1108432 1108348 Tyr GTA aataccacgt tcttcctgaa0 0 66.59 40.1026.49 Both
chr 128 1108316 1108232 Tyr GTA aggcccctgt tcattcaaga0 0 66.59 40.1026.49 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.