GtRNAdb

tRNAscan-SE Analysis of Aeropyrum pernix

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tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 3 334925 335001 Ala CGC gaggctgggc gcgggccttc0 0 93.45 82.9410.51  
chr 39 455727 455651 Ala GGC gcgcgggtgt tacaacacct0 0 88.60 77.4411.16  
chr 27 1194213 1194137 Ala TGC tagcctgggt ccctacacac0 0 93.25 82.0911.16  
 
chr 1 198449 198526 Arg CCG agatcagagg tcagacccgc0 0 92.70 83.649.06  
chr 26 1275750 1275673 Arg CCT aaggagaagg caccgccaaa0 0 91.62 80.8510.77  
chr 9 584144 584222 Arg GCG aatagagcag catcttaaca0 0 92.86 83.819.05  
chr 17 1665596 1665674 Arg TCG ccaataagga caacacactc0 0 92.38 83.339.05  
chr 12 1011525 1011646 Arg TCT cactcggagc caacagcccc1011564 1011607 82.42 73.379.05  
 
chr 41 402462 402386 Asn GTT tagggagggt gaaaccatcc0 0 86.11 73.3712.74  
 
chr 4 372080 372278 Asp GTC tgtgaaccgg ataatcctcg372120 372240 54.79 40.6914.10  
 
chr 23 1391457 1391362 Cys GCA actaactggg tctaaccctt1391419 1391402 65.01 50.9014.11  
 
chr 20 1486515 1486440 Gln CTG atcgacaggt cccctacagc0 0 70.54 51.1919.35  
chr 33 942051 941976 Gln TTG tcgggccagt tctttcacaa0 0 71.26 53.5317.73  
 
chr 14 1139987 1140064 Glu CTC aagcgcggga tactattaat0 0 84.08 69.9814.10  
chr 24 1391318 1391241 Glu TTC gcaatgggga tacaagaggg0 0 84.64 70.5414.10  
 
chr 32 986027 985949 Gly CCC atagtatggc caaacacctc0 0 90.77 80.799.98  
chr 38 467913 467835 Gly GCC cagtctggac cccgtcatcc0 0 91.07 81.199.88  
chr 19 1528663 1528585 Gly TCC gcctgcgcgg ggcattttaa0 0 91.33 81.359.98  
 
chr 22 1422799 1422722 His GTG aacaagggtg caaaccatcc0 0 91.56 80.2311.33  
 
chr 10 606038 606114 Ile GAT agtggcctgg cccttccttc0 0 95.34 82.0813.26  
 
chr 6 446761 446848 Leu CAA tattatgggt cccctctaca0 0 72.62 53.5219.10  
chr 25 1295880 1295793 Leu CAG gattatcggt ctggagagca0 0 79.97 59.0720.90  
chr 28 1178929 1178842 Leu GAG tctacacggt taatactgcc0 0 79.89 58.9920.90  
chr 36 492006 491919 Leu TAA tacctatggt ccctgcggtt0 0 77.60 58.5019.10  
chr 42 369232 369145 Leu TAG actacacggt ccccacgcct0 0 80.53 59.6220.91  
 
chr 49 236428 236316 Lys CTT cggcacaagc caacagcccc0 0 93.13 83.499.64  
chr 15 1176267 1176379 Lys TTT ggccgggagt caacagcccc0 0 91.48 81.849.64  
 
chr 13 1026344 1026420 Met CAT ggggtagcct taagcggggc0 0 80.37 55.1125.26  
chr 47 295529 295405 Met CAT tatacagggc gcccccaaag295491 295444 85.24 75.0010.24  
chr 5 428497 428611 Met CAT tgggaggcct catcctagcc428535 428572 82.11 68.8413.27  
 
chr 34 881960 881886 Phe GAA ggtataagct gaagctaaaa0 0 87.53 73.5613.97  
 
chr 51 150360 150239 Pro CGG tagcaagcgg ccatcccaag0 0 84.43 70.8313.60  
chr 30 1161734 1161620 Pro GGG tagacggcca tgccgtccgc1161695 1161659 71.31 57.9713.34  
chr 44 339994 339917 Pro TGG gccagtttgt gctcagctga0 0 86.35 72.2914.06  
 
chr 43 340125 340001 Ser CGA gcgaggaggt gtttgtgggg340087 340052 58.61 43.2015.41  
chr 50 192778 192691 Ser GCT aaatctgggt taaaggctcc0 0 81.64 67.9213.72  
chr 29 1163580 1163492 Ser GGA ttgcataggt acattacagg0 0 70.89 48.9121.98  
chr 35 872084 871996 Ser TGA tttagagggt cacactacaa0 0 70.62 54.5016.12  
 
chr 52 125186 125063 Thr CGT aaggatgagg cccctataaa125150 125102 78.20 68.249.96  
chr 31 997237 997162 Thr GGT taacggaggg aatcccatcc0 0 88.81 77.1111.70  
chr 48 295325 295231 Thr TGT acctgggagg caaacatctt0 0 90.42 80.469.96  
 
chr 40 403103 402990 Trp CCA aactgggggc cagcccccat0 0 88.00 76.6411.36  
 
chr 21 1462307 1462194 Tyr GTA gaatagtggt ttagggtccc1462271 1462233 71.65 53.4118.24  
 
chr 45 330242 330165 Val CAC gagccctaag acaattgtat0 0 88.39 75.4112.98  
chr 16 1277182 1277259 Val GAC ctggggccca acaccttcca0 0 87.94 74.9612.98  
chr 7 542607 542684 Val TAC ctggggccca gcgcatcata0 0 88.94 75.9612.98  


Note: Only introns located between position 37 and 38 are listed in the table above.



The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.