GtRNAdb

tRNAscan-SE Analysis of Aeropyrum pernix

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> UCSC Genome Browser
>> Genome DB
>> Genome Seq
Gene Family Analysis / Notes
Blast output of tRNAs against masked genome (likely missed tRNAs or fragments):

Aeropyrum_pernix_chr.trna1-ArgCCG	chr	100.00	45	0	0	34	78	200292	200336	1e-19	89.7
Aeropyrum_pernix_chr.trna17-ArgTCG	chr	97.62	42	1	0	38	79	200295	200336	2e-15	75.8
Aeropyrum_pernix_chr.trna9-ArgGCG	chr	100.00	42	0	0	38	79	200295	200336	7e-18	83.8
Aeropyrum_pernix_chr.trna12-ArgTCT	chr	97.44	39	1	0	84	122	200298	200336	2e-13	69.9
Aeropyrum_pernix_chr.trna19-GlyTCC	chr	96.77	31	1	0	41	71	200298	200328	6e-09	54.0
Aeropyrum_pernix_chr.trna32-GlyCCC	chr	96.77	31	1	0	41	71	200298	200328	6e-09	54.0
Aeropyrum_pernix_chr.trna38-GlyGCC	chr	100.00	29	0	0	41	69	200298	200326	4e-10	58.0
Aeropyrum_pernix_chr.trna22-HisGTG	chr	100.00	27	0	0	42	68	200300	200326	6e-09	54.0
Aeropyrum_pernix_chr.trna47-MetCAT	chr	96.55	29	1	0	89	117	200300	200328	2e-07	50.1
Aeropyrum_pernix_chr.trna15-LysTTT	chr	97.22	36	1	0	78	113	200301	200336	9e-12	63.9
Aeropyrum_pernix_chr.trna16-ValGAC	chr	93.75	32	2	0	43	74	200301	200332	4e-07	48.1
Aeropyrum_pernix_chr.trna31-ThrGGT	chr	92.86	28	2	0	41	68	200301	200328	9e-05	40.1
Aeropyrum_pernix_chr.trna3-AlaCGC	chr	96.15	26	1	0	42	67	200301	200326	6e-06	44.1
Aeropyrum_pernix_chr.trna45-ValCAC	chr	93.75	32	2	0	43	74	200301	200332	4e-07	48.1
Aeropyrum_pernix_chr.trna49-LysCTT	chr	97.22	36	1	0	78	113	200301	200336	9e-12	63.9
Aeropyrum_pernix_chr.trna7-ValTAC	chr	93.75	32	2	0	43	74	200301	200332	4e-07	48.1
Aeropyrum_pernix_chr.trna27-AlaTGC	chr	96.00	25	1	0	43	67	200302	200326	2e-05	42.1
Aeropyrum_pernix_chr.trna39-AlaGGC	chr	96.00	25	1	0	43	67	200302	200326	2e-05	42.1
Aeropyrum_pernix_chr.trna30-ProGGG	chr	100.00	24	0	0	84	107	200305	200328	6e-07	48.1
Aeropyrum_pernix_chr.trna1-ArgCCG	chr	90.62	32	3	0	25	56	202323	202354	9e-05	40.1
Aeropyrum_pernix_chr.trna17-ArgTCG	chr	92.86	28	2	0	48	75	328994	328967	9e-05	40.1
Aeropyrum_pernix_chr.trna26-ArgCCT	chr	92.86	28	2	0	47	74	328994	328967	9e-05	40.1
Aeropyrum_pernix_chr.trna34-PheGAA	chr	95.83	24	1	0	44	67	328994	328971	9e-05	40.1
Aeropyrum_pernix_chr.trna44-ProTGG	chr	96.88	32	1	0	47	78	328994	328963	2e-09	56.0
Aeropyrum_pernix_chr.trna51-ProCGG	chr	100.00	32	0	0	91	122	328994	328963	1e-11	63.9
Aeropyrum_pernix_chr.trna5-MetCAT	chr	93.75	32	2	0	84	115	328994	328963	6e-07	48.1
Aeropyrum_pernix_chr.trna40-TrpCCA	chr	93.94	33	2	0	82	114	328995	328963	1e-07	50.1
Aeropyrum_pernix_chr.trna10-IleGAT	chr	91.43	35	3	0	43	77	328997	328963	1e-06	46.1
Aeropyrum_pernix_chr.trna1-ArgCCG	chr	93.75	32	2	0	43	74	328998	328967	4e-07	48.1
Aeropyrum_pernix_chr.trna9-ArgGCG	chr	93.75	32	2	0	44	75	328998	328967	4e-07	48.1
Aeropyrum_pernix_chr.trna15-LysTTT	chr	90.91	33	3	0	77	109	328999	328967	3e-05	42.1
Aeropyrum_pernix_chr.trna49-LysCTT	chr	90.91	33	3	0	77	109	328999	328967	3e-05	42.1
Aeropyrum_pernix_chr.trna16-ValGAC	chr	100.00	39	0	0	40	78	329001	328963	4e-16	77.8
Aeropyrum_pernix_chr.trna3-AlaCGC	chr	87.80	41	5	0	37	77	329003	328963	2e-05	42.1
Aeropyrum_pernix_chr.trna7-ValTAC	chr	100.00	42	0	0	37	78	329004	328963	7e-18	83.8
Aeropyrum_pernix_chr.trna45-ValCAC	chr	100.00	45	0	0	34	78	329007	328963	1e-19	89.7
Aeropyrum_pernix_chr.trna25-LeuCAG	chr	93.75	64	4	0	25	88	478213	478150	2e-21	95.6
Aeropyrum_pernix_chr.trna28-LeuGAG	chr	93.75	64	4	0	25	88	478213	478150	2e-21	95.6
Aeropyrum_pernix_chr.trna36-LeuTAA	chr	100.00	64	0	0	25	88	478213	478150	6e-31	 127
Aeropyrum_pernix_chr.trna42-LeuTAG	chr	95.31	64	3	0	25	88	478213	478150	8e-24	 103
Aeropyrum_pernix_chr.trna6-LeuCAA	chr	96.88	64	2	0	25	88	478213	478150	3e-26	 111
Aeropyrum_pernix_chr.trna16-ValGAC	chr	96.00	50	2	0	29	78	580684	580733	7e-18	83.8
Aeropyrum_pernix_chr.trna3-AlaCGC	chr	86.00	50	7	0	28	77	580684	580733	6e-06	44.1
Aeropyrum_pernix_chr.trna45-ValCAC	chr	98.00	50	1	0	29	78	580684	580733	3e-20	91.7
Aeropyrum_pernix_chr.trna7-ValTAC	chr	100.00	50	0	0	29	78	580684	580733	1e-22	99.6
Aeropyrum_pernix_chr.trna15-LysTTT	chr	90.91	33	3	0	77	109	580697	580729	3e-05	42.1
Aeropyrum_pernix_chr.trna49-LysCTT	chr	90.91	33	3	0	77	109	580697	580729	3e-05	42.1
Aeropyrum_pernix_chr.trna1-ArgCCG	chr	93.75	32	2	0	43	74	580698	580729	4e-07	48.1
Aeropyrum_pernix_chr.trna9-ArgGCG	chr	93.75	32	2	0	44	75	580698	580729	4e-07	48.1
Aeropyrum_pernix_chr.trna10-IleGAT	chr	91.43	35	3	0	43	77	580699	580733	1e-06	46.1
Aeropyrum_pernix_chr.trna40-TrpCCA	chr	93.94	33	2	0	82	114	580701	580733	1e-07	50.1
Aeropyrum_pernix_chr.trna17-ArgTCG	chr	92.86	28	2	0	48	75	580702	580729	9e-05	40.1
Aeropyrum_pernix_chr.trna26-ArgCCT	chr	92.86	28	2	0	47	74	580702	580729	9e-05	40.1
Aeropyrum_pernix_chr.trna34-PheGAA	chr	95.83	24	1	0	44	67	580702	580725	9e-05	40.1
Aeropyrum_pernix_chr.trna44-ProTGG	chr	96.88	32	1	0	47	78	580702	580733	2e-09	56.0
Aeropyrum_pernix_chr.trna51-ProCGG	chr	100.00	32	0	0	91	122	580702	580733	1e-11	63.9
Aeropyrum_pernix_chr.trna5-MetCAT	chr	93.75	32	2	0	84	115	580702	580733	6e-07	48.1
Aeropyrum_pernix_chr.trna31-ThrGGT	chr	90.48	63	6	0	7	69	898974	899036	4e-16	77.8
Aeropyrum_pernix_chr.trna3-AlaCGC	chr	90.91	44	4	0	24	67	898990	899033	1e-09	56.0
Aeropyrum_pernix_chr.trna1-ArgCCG	chr	92.86	28	2	0	43	70	899008	899035	9e-05	40.1
Aeropyrum_pernix_chr.trna9-ArgGCG	chr	92.86	28	2	0	44	71	899008	899035	9e-05	40.1
Aeropyrum_pernix_chr.trna27-AlaTGC	chr	96.00	25	1	0	43	67	899009	899033	2e-05	42.1
Aeropyrum_pernix_chr.trna39-AlaGGC	chr	96.00	25	1	0	43	67	899009	899033	2e-05	42.1
Aeropyrum_pernix_chr.trna1-ArgCCG	chr	100.00	45	0	0	34	78	1666802	1666846	1e-19	89.7
Aeropyrum_pernix_chr.trna17-ArgTCG	chr	97.62	42	1	0	38	79	1666805	1666846	2e-15	75.8
Aeropyrum_pernix_chr.trna9-ArgGCG	chr	100.00	42	0	0	38	79	1666805	1666846	7e-18	83.8
Aeropyrum_pernix_chr.trna12-ArgTCT	chr	97.44	39	1	0	84	122	1666808	1666846	2e-13	69.9
Aeropyrum_pernix_chr.trna19-GlyTCC	chr	96.77	31	1	0	41	71	1666808	1666838	6e-09	54.0
Aeropyrum_pernix_chr.trna32-GlyCCC	chr	96.77	31	1	0	41	71	1666808	1666838	6e-09	54.0
Aeropyrum_pernix_chr.trna38-GlyGCC	chr	100.00	29	0	0	41	69	1666808	1666836	4e-10	58.0
Aeropyrum_pernix_chr.trna22-HisGTG	chr	100.00	27	0	0	42	68	1666810	1666836	6e-09	54.0
Aeropyrum_pernix_chr.trna47-MetCAT	chr	96.55	29	1	0	89	117	1666810	1666838	2e-07	50.1
Aeropyrum_pernix_chr.trna15-LysTTT	chr	97.22	36	1	0	78	113	1666811	1666846	9e-12	63.9
Aeropyrum_pernix_chr.trna16-ValGAC	chr	93.75	32	2	0	43	74	1666811	1666842	4e-07	48.1
Aeropyrum_pernix_chr.trna31-ThrGGT	chr	92.86	28	2	0	41	68	1666811	1666838	9e-05	40.1
Aeropyrum_pernix_chr.trna3-AlaCGC	chr	96.15	26	1	0	42	67	1666811	1666836	6e-06	44.1
Aeropyrum_pernix_chr.trna45-ValCAC	chr	93.75	32	2	0	43	74	1666811	1666842	4e-07	48.1
Aeropyrum_pernix_chr.trna49-LysCTT	chr	97.22	36	1	0	78	113	1666811	1666846	9e-12	63.9
Aeropyrum_pernix_chr.trna7-ValTAC	chr	93.75	32	2	0	43	74	1666811	1666842	4e-07	48.1
Aeropyrum_pernix_chr.trna27-AlaTGC	chr	96.00	25	1	0	43	67	1666812	1666836	2e-05	42.1
Aeropyrum_pernix_chr.trna39-AlaGGC	chr	96.00	25	1	0	43	67	1666812	1666836	2e-05	42.1
Aeropyrum_pernix_chr.trna30-ProGGG	chr	100.00	24	0	0	84	107	1666815	1666838	6e-07	48.1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.