GtRNAdb

tRNAscan-SE Analysis of Anopheles gambiae

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> Genome DB
>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr2L 1 6105713 6105785 Val CAC cttcaccaac tatataaact0 0 83.88 58.2825.60 Both
chr2L 2 9780556 9780629 Asn GTT aattcatatc gtgaagtttt0 0 83.46 63.8619.60 Both
chr2L 3 9892709 9892780 Glu CTC aaaaccaaca aatgtgtttt0 0 79.86 56.8323.03 Both
chr2L 4 10058609 10058681 Lys TTT agagataaga gctgactatt0 0 56.01 45.4710.54 Eufind
chr2L 5 10618945 10619018 Pseudo TAA tcgtgttgtc cgccgccata0 0 23.94 25.55-1.61 Eufind
chr2L 6 10738148 10738220 Lys CTT ctcaacagat caaagatttt0 0 80.47 57.8122.66 Both
chr2L 7 14668048 14668118 Gly GCC ctccaaccga atgagcattt0 0 82.25 63.2718.98 Both
chr2L 8 15481054 15481126 Val AAC tctatcagct gagagacctt0 0 77.72 53.2724.45 Both
chr2L 9 16557453 16557534 Ser AGA ttaactgtga gttttttggg0 0 84.54 52.2532.29 Both
chr2L 10 16997688 16997759 Glu TTC gcagatgtgc gaagagagta0 0 80.27 56.6023.67 Both
chr2L 11 18649875 18649946 Pro TGG gtcaacaggt agaattgctt0 0 75.74 54.0421.70 Both
chr2L 12 18784528 18784599 Glu CTC ttacaacacc aagcgaatta0 0 79.25 55.7523.50 Both
chr2L 13 19729816 19729887 Ala CGC caaggaacat aggtggtgtg0 0 75.02 52.9622.06 Both
chr2L 14 22061211 22061311 Tyr GTA gagacatgtg gagaaggaaa22061248 22061275 75.32 48.6426.68 Both
chr2L 15 22777748 22777820 Lys CTT ctttcaacaa cgatgaagta0 0 80.47 57.8122.66 Both
chr2L 16 23993379 23993479 Tyr GTA tctctcatca agcgctagaa23993416 23993443 77.33 52.2825.05 Both
chr2L 17 29653053 29653124 His GTG agcctcgata gcgttgttgt0 0 60.34 41.1619.18 Both
chr2L 18 29762939 29763010 His GTG acccccgata gtgtgttgta0 0 67.41 42.8224.59 Both
chr2L 19 29808708 29808780 Val AAC tcattcatcg ggttagcttt0 0 82.09 56.6625.43 Both
chr2L 20 29809134 29809205 His GTG cacatctaaa gtgttgccag0 0 67.41 42.8224.59 Both
chr2L 21 29809716 29809787 His GTG agcatcttaa gtgttgccag0 0 67.41 42.8224.59 Both
chr2L 22 29810350 29810421 His GTG agcatcttaa gtgttgccag0 0 53.59 33.5420.05 Both
chr2L 23 29810769 29810840 His GTG agcatctgaa gtgttgccag0 0 67.41 42.8224.59 Both
chr2L 24 29811335 29811406 His GTG agcatctgaa gtgttgccag0 0 67.41 42.8224.59 Both
chr2L 25 29942173 29942245 Val AAC tggtatagca tgcgaatgtt0 0 82.09 56.6625.43 Both
chr2L 26 30429346 30429418 Val AAC catttcaact aacataagaa0 0 82.09 56.6625.43 Both
chr2L 27 30429871 30429942 His GTG aacatctgca tcggctactg0 0 67.41 42.8224.59 Both
chr2L 28 31100715 31100786 Glu CTC aagtaacaac atggcccttt0 0 79.25 55.7523.50 Both
chr2L 29 34057954 34058025 Cys GCA aactgtgcaa ttccggaaaa0 0 76.52 57.4519.07 Both
chr2L 30 39363918 39363989 Glu CTC caggtacaag aatcactttt0 0 79.25 55.7523.50 Both
chr2L 31 41633777 41633849 Lys CTT cttccaacgt ttatctattc0 0 80.47 57.8122.66 Both
chr2L 32 42159290 42159361 Met CAT gggaacgaag tcgggaaatc0 0 63.19 38.1425.05 Both
chr2L 33 44400916 44400997 Ser CGA gtgtatatgt aagttttttt0 0 86.41 56.9029.51 Both
chr2L 34 44797285 44797357 Val CAC tctaacatct agtgaagtgt0 0 83.88 58.2825.60 Both
chr2L 35 45501714 45501787 Asn GTT ttctctcacc caggaaacac0 0 83.46 63.8619.60 Both
chr2L 36 45502940 45503022 Leu CAG acgcacacaa atcgggaact0 0 74.76 46.1028.66 Both
chr2L 37 46001403 46001475 Val TAC gagcatgagc gagtttcttt0 0 76.11 44.8731.24 Both
chr2L 38 46052072 46052144 Val TAC ccttcagcac atgccaaaac0 0 76.11 44.8731.24 Both
chr2L 39 46564059 46564158 Tyr GTA agagcgtaag gagttggaaa46564096 46564122 74.42 47.7326.69 Both
chr2L 40 46579229 46579379 Tyr GTA gcaatcaaca tgccgttttt46579266 46579343 63.60 39.2524.35 Both
chr2L 41 46579460 46579601 Tyr GTA ttgttcaaca gcaagttgtt46579497 46579565 71.06 44.3726.69 Both
chr2L 42 46579861 46579986 Tyr GTA agcctcgaag gtgtgaaaac46579898 46579950 74.83 48.1526.68 Both
chr2L 43 46580278 46580419 Tyr GTA gtctactcat gcaatttcgg46580315 46580383 73.11 46.4326.68 Both
chr2L 44 46580678 46580807 Tyr GTA agcctcgacg tcaatatgct46580715 46580771 71.96 45.2826.68 Both
chr2L 45 46584062 46584332 Tyr GTA gctttcgaag atggtgaaaa46584099 46584296 57.49 30.8026.69 Eufind
chr2L 46 46584505 46584639 Tyr GTA gctcatatca agattatttt46584542 46584603 75.13 48.4526.68 Both
chr2L 47 46584868 46584992 Tyr GTA agcctcgaag gtgtggaaac46584905 46584956 74.34 47.6526.69 Both
chr2L 48 46585254 46585399 Tyr GTA gtttacttat gcaagtttgg46585291 46585363 70.73 44.0526.68 Both
chr2L 49 46585652 46585794 Tyr GTA agcctcgaag agccgatttt46585689 46585758 73.80 47.1226.68 Both
chr2L 50 46585880 46586009 Tyr GTA ttgttcaaca gtgtagaatc46585917 46585973 72.15 45.4626.69 Both
chr2L 51 46602011 46602083 Val AAC caaagcatct tggttccttt0 0 82.09 56.6625.43 Both
chr2L 52 46611269 46611341 Arg TCT ctccacaaat tgtgagcgaa0 0 81.43 57.8123.62 Both
chr2L 53 46622585 46622680 Tyr GTA tccgacacat acgaagagac46622622 46622644 77.04 50.3526.69 Both
chr2L 54 46623063 46623153 Tyr GTA tctctcatcg taccgagaat46623100 46623117 74.65 47.9626.69 Both
chr2L 55 46629471 46629542 Glu TTC ctcacaagcc agattatttt0 0 80.27 56.6023.67 Both
chr2L 56 47207278 47207351 Glu CTC cgttcaccag agcttttttt0 0 47.32 32.5114.81 Both
chr2L 57 47548690 47548761 Glu TTC cactcacaca ggattctttt0 0 80.27 56.6023.67 Both
chr2L 58 47569212 47569284 Arg CCT ccttcatgac aaaaagaata0 0 67.27 50.7816.49 Both
chr2L 59 49093506 49093578 Lys CTT cttcacacaa cgcatgaagc0 0 80.47 57.8122.66 Both
chr2L 60 49094003 49093932 Gln CTG gtggtaagaa gcgagagata0 0 69.92 45.2724.65 Both
chr2L 61 47557460 47557379 Leu AAG ccgccacaac acatatattt0 0 65.26 41.7923.47 Both
chr2L 62 47545459 47545388 Glu CTC tagatgcatc agagactaat0 0 79.86 56.8323.03 Both
chr2L 63 47207818 47207747 Glu CTC tccccaacag aatagttctt0 0 79.25 55.7523.50 Both
chr2L 64 47206803 47206732 Glu TTC tctccccatc catacctttt0 0 80.27 56.6023.67 Both
chr2L 65 46574991 46574835 Tyr GTA ttttccatcg tcgtagacat46574954 46574871 77.85 51.1626.69 Eufind
chr2L 66 46574587 46574446 Tyr GTA gtttactcat gcaagttgta46574550 46574482 71.06 44.3726.69 Both
chr2L 67 46574185 46574061 Tyr GTA agcctcgaag agtttgaaca46574148 46574097 74.20 47.5226.68 Both
chr2L 68 46003719 46003647 Val TAC caccatcggc agaaaatatt0 0 76.11 44.8731.24 Both
chr2L 69 45999232 45999160 Val AAC catcacagct ggagaaactt0 0 82.09 56.6625.43 Both
chr2L 70 45498846 45498773 Asn GTT cagtcacatc caggaaatac0 0 83.46 63.8619.60 Both
chr2L 71 44792453 44792382 Gly TCC gaaaacatgg cgattctttt0 0 72.21 53.2119.00 Both
chr2L 72 44764687 44764615 Lys CTT cctcaacgac catgaagctt0 0 80.47 57.8122.66 Both
chr2L 73 44763679 44763607 Thr TGT cctatcacat cgtcgcaact0 0 76.48 52.0424.44 Both
chr2L 74 40037718 40037637 Ser GCT tcttacacat aacaggaatg0 0 82.84 56.1726.67 Both
chr2L 75 38668172 38668100 Val CAC tccttcaagc agatcgcttt0 0 83.88 58.2825.60 Both
chr2L 76 38217510 38217439 Gln CTG ttgcaagtcg accgaataca0 0 73.26 49.6223.64 Both
chr2L 77 36768776 36768705 Met CAT actctcacag atatcagact0 0 68.98 38.5930.39 Both
chr2L 78 36764910 36764838 Met CAT ctatcagctt gggaagaaaa0 0 79.42 58.6720.75 Both
chr2L 79 36763471 36763400 Met CAT ttaaacatga atcggttaga0 0 68.98 38.5930.39 Both
chr2L 80 36762792 36762720 Met CAT cataccacaa gatttattta0 0 83.32 62.5820.74 Both
chr2L 81 35416889 35416792 Ile TAT tagcgcacac gcaacagtgt35416851 35416828 65.28 37.0828.20 Both
chr2L 82 33780319 33780246 Asn GTT ctaacgcatc gcgaaattct0 0 83.46 63.8619.60 Both
chr2L 83 32711177 32711105 Thr TGT tgtcaacggt gtggtgagaa0 0 76.48 52.0424.44 Both
chr2L 84 29812041 29811969 Val AAC aaatcgatcg atggatgttt0 0 82.09 56.6625.43 Both
chr2L 85 29804123 29804052 His GTG gccttcaata gtgttgccag0 0 67.41 42.8224.59 Both
chr2L 86 29580192 29580110 Leu CAG cttgcaacat aatcaatttc0 0 75.17 45.4529.72 Both
chr2L 87 29572716 29572644 Val AAC aacaatagag gcaatgacag0 0 79.44 53.8425.60 Both
chr2L 88 29572482 29572410 Val CAC aacaatagag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 89 29572248 29572176 Val CAC aacaatagag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 90 29572014 29571942 Val CAC aacaatagag gcaatgacag0 0 73.91 54.5519.36 Both
chr2L 91 29571776 29571704 Val AAC aacaatagag gcaatgacag0 0 79.44 53.8425.60 Both
chr2L 92 29571542 29571470 Val AAC aataaaagag gcaaagacag0 0 79.44 53.8425.60 Both
chr2L 93 29571308 29571236 Val CAC aacaatagag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 94 29571074 29571002 Val CAC aacaatagag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 95 29570836 29570764 Val AAC aataatagag gcaaagacag0 0 79.44 53.8425.60 Both
chr2L 96 29570602 29570530 Val CAC aacaatagag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 97 29570368 29570296 Val CAC aacaatagag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 98 29570134 29570062 Val CAC aacaatatag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 99 29569896 29569824 Val AAC aacaatagag gcaatgacag0 0 79.44 53.8425.60 Both
chr2L 100 29569661 29569589 Val CAC aacaatagag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 101 29569427 29569355 Val AAC aacaatagag gcaatgtcat0 0 79.44 53.8425.60 Both
chr2L 102 29569197 29569125 Val AAC aacaatagag gcaacgacag0 0 79.44 53.8425.60 Both
chr2L 103 29568959 29568887 Val CAC aacaatagag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 104 29568725 29568653 Val AAC aacaatagag gcaatgtcat0 0 79.44 53.8425.60 Both
chr2L 105 29568495 29568423 Val CAC aacaatagag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 106 29568261 29568189 Val AAC aacaatagag gcaatgacag0 0 67.50 45.4922.01 Both
chr2L 107 29568027 29567955 Val CAC aacaatagag gcaatgacag0 0 74.46 52.4122.05 Both
chr2L 108 29567793 29567721 Val AAC aacaatagag gcaatgacag0 0 74.75 53.0621.69 Both
chr2L 109 29567555 29567483 Val CAC aacaatagag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 110 29567321 29567249 Val CAC aacaatagag gcaatgacag0 0 74.46 52.4122.05 Both
chr2L 111 29567087 29567015 Val AAC aacaatagag gcaatgacag0 0 79.44 53.8425.60 Both
chr2L 112 29566853 29566781 Val CAC aacaatagag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 113 29566619 29566547 Val AAC aacaatagag gcaatgtcat0 0 79.44 53.8425.60 Both
chr2L 114 29566389 29566317 Val CAC aacaatagag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 115 29566155 29566083 Val CAC aacaatatag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 116 29565921 29565849 Val CAC aacaatagag gcaacgacag0 0 84.05 58.4525.60 Both
chr2L 117 29565687 29565615 Val CAC aacaatagag gcaacgacag0 0 84.05 58.4525.60 Both
chr2L 118 29565449 29565377 Val AAC aacagtagag gcaatgacag0 0 79.44 53.8425.60 Both
chr2L 119 29565278 29565206 Val CAC aacaatagag gcaatgacag0 0 79.95 54.3525.60 Both
chr2L 120 29565040 29564968 Val AAC aacagtagaa gcaatgacag0 0 79.44 53.8425.60 Both
chr2L 121 29564869 29564797 Val CAC aacaatagag gcaatgacag0 0 73.69 53.3320.36 Both
chr2L 122 29564635 29564563 Val AAC aacaatagag gcaatgacag0 0 79.44 53.8425.60 Both
chr2L 123 29564401 29564329 Val CAC aacaatagag gcaatgacag0 0 75.57 50.9624.61 Both
chr2L 124 28157607 28157534 Asn GTT cagtatcgtc tgggaatcgg0 0 83.46 63.8619.60 Both
chr2L 125 23437111 23437040 Glu TTC gtttctcatc cgcgattcct0 0 80.27 56.6023.67 Both
chr2L 126 22734404 22734332 Ala AGC tagtaaccac agaggacaag0 0 65.14 44.9420.20 Both
chr2L 127 22670884 22670812 Ala AGC cattcaacca actgggcaaa0 0 65.14 44.9420.20 Both
chr2L 128 22668604 22668532 Ala AGC ttctcaacca aggaaatcca0 0 65.14 44.9420.20 Both
chr2L 129 15723520 15723449 Pro CGG ttagacatgt gttgacgaaa0 0 76.28 54.2322.05 Both
chr2L 130 15482432 15482362 Gly GCC cttgcacgaa ttgaatttaa0 0 82.25 63.2718.98 Both
chr2L 131 15480024 15479954 Gly GCC cttcaaccaa gacgagtgtt0 0 82.25 63.2718.98 Both
chr2L 132 15473270 15473200 Gly GCC cctacacgaa accggaatca0 0 82.25 63.2718.98 Both
chr2L 133 15468290 15468218 Arg TCG ctgtcagcgg catactggga0 0 69.68 51.9517.73 Both
chr2L 134 12526056 12525985 Glu CTC cgatcaacag actttttttc0 0 79.25 55.7523.50 Both
chr2L 135 9892366 9892294 Met CAT atcaaacatc ggtgtgttaa0 0 79.42 58.6720.75 Both
chr2L 136 9784639 9784568 Met CAT atgcacacga tcttcaaata0 0 65.36 38.3127.05 Both
chr2L 137 9782540 9782469 Met CAT tacatcagca taatagaatt0 0 65.36 38.3127.05 Both
chr2L 138 9781204 9781131 Asn GTT atgcaagttc acgatctttt0 0 83.46 63.8619.60 Both
chr2L 139 6101768 6101697 Pro CGG aatttctatc atgatatttt0 0 72.75 54.1918.56 Both
chr2L 140 6100005 6099934 Pro CGG cgtttctatc atgatatttt0 0 72.75 54.1918.56 Both
chr2L 141 6099779 6099708 Pro AGG cgtttctatc atgatatttt0 0 72.15 53.5918.56 Both
chr2L 142 3876760 3876688 Lys CTT cgccactagt acgaatgatg0 0 80.47 57.8122.66 Both
chr2L 143 1929996 1929925 Pro AGG cgacagaacg accgcttgag0 0 52.43 36.5015.93 Both
 

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr2R 1 170662 170764 Ile TAT gcaagcatct gcgctctcga170700 170728 65.20 37.0028.20 Both
chr2R 2 1180148 1180229 Ser AGA ctcataagaa gctaagatga0 0 84.54 52.2532.29 Both
chr2R 3 8880032 8880103 Asp GTC tcagcacatg ggggagaatc0 0 74.99 51.1823.81 Both
chr2R 4 11295934 11296005 Asp GTC ctctcacatg gcagattctt0 0 74.99 51.1823.81 Both
chr2R 5 11307656 11307737 Ser AGA ttcacatcaa agtataagcc0 0 84.54 52.2532.29 Both
chr2R 6 11337066 11337138 Arg ACG tttcccaacg ctcgacgaga0 0 73.12 53.2819.84 Both
chr2R 7 11352124 11352195 Ala TGC tcacatcgac gcgagagaag0 0 75.14 52.3722.77 Both
chr2R 8 11360407 11360488 Ser AGA ccatcaccaa aaaaatgatg0 0 84.54 52.2532.29 Both
chr2R 9 11364131 11364212 Ser AGA tctgcaagca cgcctttttt0 0 83.36 53.8529.51 Both
chr2R 10 11365429 11365510 Ser AGA tccgcaagca tacctctttt0 0 83.36 53.8529.51 Both
chr2R 11 11388289 11388360 Pro TGG aacggcaggt gtgaaagccg0 0 75.74 54.0421.70 Both
chr2R 12 11393010 11393082 Ala AGC cactcatcac accgaccttt0 0 65.14 44.9420.20 Both
chr2R 13 11436109 11436190 Ser TGA tcacacatct tacttcttcc0 0 77.94 42.5335.41 Both
chr2R 14 11437077 11437150 Thr AGT acgcacacat atcacagaac0 0 74.61 59.9514.66 Both
chr2R 15 11438918 11438991 Thr AGT gcacacaact atcgccattc0 0 74.61 59.9514.66 Both
chr2R 16 11446452 11446523 Ala TGC aaagtgtgag ggaagctttc0 0 75.14 52.3722.77 Both
chr2R 17 12101674 12101745 Asp GTC gcccatcaca gagaaatata0 0 74.99 51.1823.81 Both
chr2R 18 20698736 20698817 Ser GCT atgcacaaga agctgaagtt0 0 82.84 56.1726.67 Both
chr2R 19 23459367 23459439 Ala AGC agtatcacca aaaactcttt0 0 65.14 44.9420.20 Both
chr2R 20 25207247 25207318 Glu CTC ccgctaacag actctttttt0 0 79.25 55.7523.50 Both
chr2R 21 25510326 25510421 Tyr GTA ctgccccaag gagtcgaaac25510363 25510385 75.61 48.9226.69 Both
chr2R 22 25721497 25721579 Leu CAG attctaacca ttcgaatgct0 0 75.17 45.4529.72 Both
chr2R 23 25721994 25722076 Leu CAG caatagacaa aaagatgttc0 0 75.17 45.4529.72 Both
chr2R 24 25722329 25722411 Leu CAG caatagacaa acagactatt0 0 75.17 45.4529.72 Both
chr2R 25 25722662 25722744 Leu CAG caatagacaa ttcgatatat0 0 75.17 45.4529.72 Both
chr2R 26 25723627 25723709 Leu CAG gaaataacat aatgagcttt0 0 75.17 45.4529.72 Both
chr2R 27 27030814 27030885 Gly TCC aattcgacgt tagacttttt0 0 72.21 53.2119.00 Both
chr2R 28 32434922 32434994 Lys CTT aggataactt ctagaggttt0 0 80.47 57.8122.66 Both
chr2R 29 32435821 32435892 Met CAT tcacacgaag tcgggaaaat0 0 65.36 38.3127.05 Both
chr2R 30 32444715 32444786 Glu CTC cattcatcag actcttttgc0 0 79.25 55.7523.50 Both
chr2R 31 32504775 32504848 Ile AAT tagaacaagc tctgaaagtt0 0 77.68 56.0221.66 Both
chr2R 32 35213034 35213106 Lys TTT ctctccagga tgggaaaagt0 0 82.41 59.0523.36 Both
chr2R 33 35216147 35216220 Asn GTT ttcactcatc gcgaaacttt0 0 83.46 63.8619.60 Both
chr2R 34 37444265 37444336 Ala CGC cctatcacat aaattcgctc0 0 75.02 52.9622.06 Both
chr2R 35 37707745 37707826 Leu AAG agggtaagaa cagatgtgat0 0 71.48 46.0825.40 Both
chr2R 36 37708261 37708342 Leu AAG ctgacaagca agagggaact0 0 71.48 46.0825.40 Both
chr2R 37 37856478 37856549 Gly TCC cttatcaagc cgaaaatttt0 0 72.21 53.2119.00 Both
chr2R 38 37857375 37857446 His GTG cgttctcgta gtgtcgcaca0 0 67.41 42.8224.59 Both
chr2R 39 37857999 37858071 Arg TCG tctcccaagc aacaccaaga0 0 68.87 49.2219.65 Both
chr2R 40 37884513 37884584 Gly TCC agaagagagt cagagttctt0 0 72.21 53.2119.00 Both
chr2R 41 37885138 37885209 His GTG tgtctcgata gtgtcgctcg0 0 67.41 42.8224.59 Both
chr2R 42 44033938 44034009 Pro CGG tctcaaccgt gagatggact0 0 72.94 54.0218.92 Both
chr2R 43 44231696 44231777 Ser GCT atccaactgc ggcattacga0 0 87.38 60.7126.67 Both
chr2R 44 46939155 46939227 Lys TTT ttcgcaactg acaataatgc0 0 83.78 61.5922.19 Both
chr2R 45 46941350 46941423 Ile AAT ttggtcaact agaatatttt0 0 77.68 56.0221.66 Both
chr2R 46 46944131 46944204 Ile AAT gaatgcacac atgaatgttt0 0 77.68 56.0221.66 Both
chr2R 47 46945357 46945428 Gly TCC ttttcaagtc cggatatatt0 0 72.21 53.2119.00 Both
chr2R 48 46957392 46957463 Trp CCA cattcatgcg atgcaatgcg0 0 75.41 53.2622.15 Both
chr2R 49 46988542 46988613 Trp CCA taggtatcaa atctgtcaca0 0 75.41 53.2622.15 Both
chr2R 50 47455093 47455164 Glu CTC ctgtcaacaa agaagtttta0 0 79.25 55.7523.50 Both
chr2R 51 47717201 47717273 Arg TCT atggcagtgt acggttacgt0 0 83.26 61.4821.78 Both
chr2R 52 48516817 48516888 Thr CGT agatatggaa gtagagataa0 0 82.08 57.6424.44 Both
chr2R 53 48578521 48578592 Thr CGT gaaatcaaga aattgctgtg0 0 82.31 57.8724.44 Both
chr2R 54 49481924 49481996 Lys TTT agggagtatg gtgagattct0 0 81.91 58.1323.78 Both
chr2R 55 49483079 49483151 Lys TTT gctggtaaga ggcgaatttt0 0 78.68 58.6120.07 Both
chr2R 56 50064657 50064729 Arg TCG tacatcggga ctggatgtgt0 0 69.68 51.9517.73 Both
chr2R 57 54258741 54258813 Val AAC tctgtcagct gagaaagttt0 0 82.09 56.6625.43 Both
chr2R 58 54263184 54263255 Gln CTG cttctcaacg actctgtcag0 0 73.26 49.6223.64 Both
chr2R 59 55074547 55074618 Gly TCC taatgtcaga cgaagctttt0 0 72.21 53.2119.00 Both
chr2R 60 55074886 55074957 His GTG gcattcgata gtgtcatcaa0 0 67.41 42.8224.59 Both
chr2R 61 55542894 55542964 Gly GCC ctcacacgaa tttgactttt0 0 82.25 63.2718.98 Both
chr2R 62 55548615 55548687 Met CAT cctgcaacaa gattcctttt0 0 83.32 62.5820.74 Both
chr2R 63 55554655 55554727 Met CAT ctccaacaca gatagatcgt0 0 83.32 62.5820.74 Both
chr2R 64 55850358 55850430 Arg TCG cctccagcgt ctgatcgaga0 0 69.68 51.9517.73 Both
chr2R 65 57467215 57467286 Gly TCC ctctcaacgt cagaactttt0 0 72.21 53.2119.00 Both
chr2R 66 57612141 57612211 Gly GCC agagcatgaa gttgagttgt0 0 82.25 63.2718.98 Both
chr2R 67 57463166 57463095 Gln CTG tcctcaacaa aaccgggtca0 0 73.26 49.6223.64 Both
chr2R 68 55996576 55996505 Glu TTC ctcccacatc aaagcttttt0 0 80.27 56.6023.67 Both
chr2R 69 55867434 55867352 Leu CAG ctttaacaca actcatgttt0 0 75.17 45.4529.72 Both
chr2R 70 55555262 55555191 Trp CCA gaaagtatgg tctttttttt0 0 75.41 53.2622.15 Both
chr2R 71 55550049 55549978 Trp CCA gagagaagaa aaaaatatga0 0 75.41 53.2622.15 Both
chr2R 72 51448701 51448631 Gly GCC taatcaacag agacgttatt0 0 82.25 63.2718.98 Both
chr2R 73 51401819 51401749 Gly GCC taatcaacaa ggccgttaat0 0 82.25 63.2718.98 Both
chr2R 74 49484024 49483908 Leu CAA cacgcaacat atgaaaatca49483986 49483953 64.70 39.7324.97 Both
chr2R 75 49481484 49481363 Leu CAA ctctcaacat gaaccaatac49481446 49481408 63.93 38.9624.97 Both
chr2R 76 49190073 49189998 Lys CTT tttcacatct tcatatctat0 0 76.48 55.2021.28 Both
chr2R 77 48627118 48627046 Lys CTT ttcaccaaca cttgacttct0 0 80.47 57.8122.66 Both
chr2R 78 48604451 48604370 Ser GCT aacatacagt gcaagattct0 0 87.38 60.7126.67 Both
chr2R 79 48604164 48604093 Ala CGC ccttcaacat aatgtcgtcg0 0 75.02 52.9622.06 Both
chr2R 80 48533761 48533690 Pro CGG ccactcgacc gctgatggat0 0 76.28 54.2322.05 Both
chr2R 81 48460466 48460395 Ala CGC agatatcgat gagtgctttt0 0 76.28 55.0021.28 Both
chr2R 82 47828539 47828467 Ala AGC tagttaccca attcgatgaa0 0 65.14 44.9420.20 Both
chr2R 83 46989195 46989100 Tyr GTA cattcaacag tcggtttcgg46989158 46989136 81.14 56.0925.05 Both
chr2R 84 46986810 46986737 Ile AAT tgttgccaac ttaatcaatt0 0 77.68 56.0221.66 Both
chr2R 85 46983598 46983525 Ile AAT aatatcacat aggaacgatt0 0 77.68 56.0221.66 Both
chr2R 86 46982808 46982735 Ile AAT tgttaataca tagagaatgt0 0 77.68 56.0221.66 Both
chr2R 87 46982362 46982289 Ile AAT tctaactata aaatatggtt0 0 73.04 55.8817.16 Eufind
chr2R 88 46982076 46982003 Ile AAT gataataaca gatctcgtta0 0 77.68 56.0221.66 Both
chr2R 89 46981273 46981200 Ile AAT gaacaataga aggtatattt0 0 77.68 56.0221.66 Both
chr2R 90 46938389 46938318 Trp CCA cagaggcaag tcttgaaaag0 0 75.41 53.2622.15 Both
chr2R 91 44047500 44047429 Pro CGG aagtaactgt caatccgatg0 0 73.17 54.2518.92 Both
chr2R 92 43444313 43444241 Val CAC gtagagaagc agtgtacttt0 0 86.33 60.7325.60 Both
chr2R 93 38990378 38990306 Lys TTT tgcttcatgt gtgatgacaa0 0 81.91 58.1323.78 Both
chr2R 94 37851686 37851615 His GTG acactcaata gtgtcgcaca0 0 67.41 42.8224.59 Both
chr2R 95 37570399 37570327 Val CAC ttctccaagc atgactcttt0 0 83.88 58.2825.60 Both
chr2R 96 32435252 32435182 Gly GCC tttctaacaa gatctctact0 0 82.25 63.2718.98 Both
chr2R 97 32433965 32433892 Ile AAT agatacaagc ttcttctctt0 0 77.68 56.0221.66 Both
chr2R 98 32432028 32431955 Ile AAT aagatatgac tgtgacactt0 0 77.68 56.0221.66 Both
chr2R 99 32429500 32429430 Gly GCC ccttcacgaa gctcgagaga0 0 82.25 63.2718.98 Both
chr2R 100 26666161 26666080 Ser GCT tcggacacga ggcgatgctt0 0 82.84 56.1726.67 Both
chr2R 101 26665705 26665624 Ser GCT gccaccacat agcggaacaa0 0 82.84 56.1726.67 Both
chr2R 102 26626389 26626314 Pseudo CAA tgcttggtcc tgcctccata0 0 21.30 27.21-5.91 Eufind
chr2R 103 25724064 25723982 Leu CAG tcatccaaca aacgaacttt0 0 75.17 45.4529.72 Both
chr2R 104 25327925 25327854 Thr CGT ctgcaagcgc ttgggaaaaa0 0 82.08 57.6424.44 Both
chr2R 105 22868444 22868372 Ala AGC ctgtacatga gacggaaaca0 0 65.14 44.9420.20 Both
chr2R 106 22854590 22854518 Ala AGC ttcaccgcat acccacacaa0 0 65.14 44.9420.20 Both
chr2R 107 14098372 14098301 Asp GTC tcacgtaacg aggaaatctc0 0 74.99 51.1823.81 Both
chr2R 108 12921150 12921077 Asn GTT cagcatcatt gcgtaattgc0 0 83.46 63.8619.60 Both
chr2R 109 12349341 12349269 Phe GAA tagcgcagca tagatttttt0 0 82.98 60.0522.93 Both
chr2R 110 12343355 12343283 Phe GAA gaacacatca gcaggtaaag0 0 82.98 60.0522.93 Both
chr2R 111 12101531 12101460 Asp GTC taagtatcta aagaaatctt0 0 74.99 51.1823.81 Both
chr2R 112 12101075 12101004 Asp GTC ttgtctcaag ggagtttttt0 0 74.99 51.1823.81 Both
chr2R 113 11446826 11446747 Leu TAG ctcagcagaa taacgctttt0 0 68.33 43.7424.59 Both
chr2R 114 11445770 11445699 Ala TGC cccatcaaca gaaacttctc0 0 75.54 53.1322.41 Both
chr2R 115 11445015 11444944 Glu TTC ctcacatgcc agactttttt0 0 78.23 53.6624.57 Both
chr2R 116 11444246 11444174 Arg ACG tcactaatcg caccctagat0 0 73.12 53.2819.84 Both
chr2R 117 11437773 11437700 Thr AGT ggagatgtct tagagtgtca0 0 74.61 59.9514.66 Both
chr2R 118 11395178 11395106 Ala AGC gtaaacacaa gtcgatcttt0 0 65.14 44.9420.20 Both
chr2R 119 11394363 11394292 Pro TGG tcaaccacgt gcgatttctt0 0 75.74 54.0421.70 Both
chr2R 120 11393576 11393505 Pro TGG ttagacatgt tggagttctt0 0 75.74 54.0421.70 Both
chr2R 121 11383517 11383444 Thr AGT ttctcaacga tcaagtccct0 0 74.61 59.9514.66 Both
chr2R 122 11382430 11382349 Ser TGA cgtcacaaca tctgcgagaa0 0 77.94 42.5335.41 Both
chr2R 123 11377425 11377354 Gln TTG caagcacgtc ttgcggtgat0 0 72.01 47.3524.66 Both
chr2R 124 11289350 11289278 Arg ACG ggttacaacg ctcgcttcca0 0 73.12 53.2819.84 Both
chr2R 125 6678571 6678499 Met CAT ctcacacaca gcaaactttt0 0 83.32 62.5820.74 Both
chr2R 126 6314238 6314167 Thr CGT ctctcatcgg gctctgaaat0 0 82.08 57.6424.44 Both
chr2R 127 6094107 6094036 Asp GTC tcctcacatg gcgattcttt0 0 74.99 51.1823.81 Both
chr2R 128 526107 526034 Thr AGT ttagtaaggt acgattattg0 0 74.61 59.9514.66 Both
chr2R 129 524561 524489 Phe GAA ggaaacatgc gggagtgttt0 0 82.98 60.0522.93 Both
 

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr3L 1 5645769 5645840 Asp GTC ttctatcaat ggaaattaac0 0 74.99 51.1823.81 Both
chr3L 2 5646636 5646707 Asp GTC gtaaataact aatagttctt0 0 62.35 43.9818.37 Both
chr3L 3 5648197 5648268 Asp GTC ataatcaact agagatagtt0 0 74.99 51.1823.81 Both
chr3L 4 5649132 5649203 Asp GTC ttgttcaacg gagagatttt0 0 74.99 51.1823.81 Both
chr3L 5 5650035 5650106 Asp GTC ttaatcaacg gaagaaagtt0 0 74.99 51.1823.81 Both
chr3L 6 5780915 5780997 Leu CAG ccttcatcga accgaacttt0 0 75.17 45.4529.72 Both
chr3L 7 6504846 6504917 Met CAT atcttaacac taaaaaatag0 0 68.98 38.5930.39 Both
chr3L 8 8001971 8002052 Ser CGA tatgtaagaa tctgaagtct0 0 86.41 56.9029.51 Both
chr3L 9 8011139 8011220 Ser CGA tatgtaagaa tctcaagtct0 0 86.41 56.9029.51 Both
chr3L 10 8129363 8129433 Gly GCC atttaatcaa aaaaaaatat0 0 82.25 63.2718.98 Both
chr3L 11 8165478 8165549 Asp GTC ttgattaaca aacatttgtt0 0 74.99 51.1823.81 Both
chr3L 12 8167264 8167335 Asp GTC gattataact aaaattgttt0 0 74.99 51.1823.81 Both
chr3L 13 8168553 8168624 Asp GTC atatttaaca gagaaatttt0 0 74.99 51.1823.81 Both
chr3L 14 8171430 8171501 Asp GTC gattataact aaaattgttt0 0 74.99 51.1823.81 Both
chr3L 15 8172720 8172791 Asp GTC atatttaaca gagaaatttt0 0 74.99 51.1823.81 Both
chr3L 16 12585547 12585619 Ala AGC ctgcaaccac gagaagaata0 0 65.14 44.9420.20 Both
chr3L 17 13066762 13066835 Asn GTT ccatcaattc gtgatacttt0 0 83.46 63.8619.60 Both
chr3L 18 13532451 13532523 Phe GAA ccatcaacca ggaataaatc0 0 82.98 60.0522.93 Both
chr3L 19 19485955 19486026 His GTG atcgtctgta gtgctgctct0 0 67.41 42.8224.59 Both
chr3L 20 20338750 20338822 Val AAC acagatgcaa tttttatcat0 0 70.43 53.0217.41 Both
chr3L 21 20339192 20339263 His GTG accgtctgta gtgccgattg0 0 67.41 42.8224.59 Both
chr3L 22 20375982 20376054 Val AAC acagatgcaa tttttatcat0 0 80.36 54.9225.44 Both
chr3L 23 20376423 20376494 His GTG accgtctgta gtgtcaaaat0 0 67.41 42.8224.59 Both
chr3L 24 20395854 20395926 Val AAC acagatgcaa tttttatcat0 0 80.36 54.9225.44 Both
chr3L 25 20396619 20396687 His GTG agtttggaga gtgtcacagt0 0 42.78 32.2110.57 Eufind
chr3L 26 26139049 26139130 Leu AAG caagcaacga ttcgaagggg0 0 65.26 41.7923.47 Both
chr3L 27 28623639 28623710 Gln CTG ccacatcaac gtcaaaaatt0 0 61.53 47.5314.00 Both
chr3L 28 28664548 28664619 Gln CTG agcatcaacg cttccgtaag0 0 72.00 47.5924.41 Both
chr3L 29 28667273 28667345 Val AAC aaatccagct gagaaccttt0 0 82.09 56.6625.43 Both
chr3L 30 28681285 28681357 Arg ACG tcttcaaccg ctacgaaaga0 0 73.12 53.2819.84 Both
chr3L 31 29128420 29128491 Gln CTG ccatcaccga gccgcagatc0 0 73.26 49.6223.64 Both
chr3L 32 29131476 29131547 Gln CTG atgtcaaccg acgagggaat0 0 73.26 49.6223.64 Both
chr3L 33 29453423 29453494 Met CAT taagatatca agcttgtgag0 0 68.98 38.5930.39 Both
chr3L 34 31025107 31025178 Met CAT aaattcaaca aaagtgatgt0 0 68.98 38.5930.39 Both
chr3L 35 34249079 34249151 Arg TCG tcatacaagc accgcgcgct0 0 71.07 53.3417.73 Both
chr3L 36 34276995 34277076 Ser CGA cttccaagaa aatcccgaaa0 0 86.41 56.9029.51 Both
chr3L 37 34355647 34355730 Leu TAA tggacaccaa agcaaaagag0 0 73.09 44.2328.86 Both
chr3L 38 34356549 34356621 Arg ACG tgttcaaccg ctcatgagaa0 0 73.12 53.2819.84 Both
chr3L 39 34540587 34540668 Ser CGA ccgcagcgca gagagtgaaa0 0 86.41 56.9029.51 Both
chr3L 40 36032748 36032819 Glu TTC tctaatcatc catacccttt0 0 80.27 56.6023.67 Both
chr3L 41 38071954 38072026 Phe GAA cttccaacca ggcaatttca0 0 82.98 60.0522.93 Both
chr3L 42 38072518 38072590 Phe GAA cccaccacct cagaaaaatc0 0 82.98 60.0522.93 Both
chr3L 43 38073179 38073251 Phe GAA ccccccacct atgtccacca0 0 82.98 60.0522.93 Both
chr3L 44 38086228 38086300 Phe GAA aagagacagc catgaggaac0 0 82.98 60.0522.93 Both
chr3L 45 38069503 38069431 Val CAC tcccagctgt gtgaaacctt0 0 86.33 60.7325.60 Both
chr3L 46 36039348 36039241 Tyr GTA ccatcacgtg gagttgatcg36039311 36039277 71.62 44.9426.68 Both
chr3L 47 35896886 35896805 Ser CGA ccttcacgaa gtgtcgaaag0 0 86.41 56.9029.51 Both
chr3L 48 34337754 34337671 Leu TAA gccagcacaa tcctcttttt0 0 73.09 44.2328.86 Both
chr3L 49 34313891 34313819 Arg ACG tcagcatgtg gcgaagtgat0 0 73.12 53.2819.84 Both
chr3L 50 34306557 34306485 Arg ACG atcatacacg atcgttatct0 0 73.12 53.2819.84 Both
chr3L 51 34289527 34289446 Ser CGA cctccaccaa tacatctttt0 0 86.41 56.9029.51 Both
chr3L 52 34274985 34274913 Arg CCT ctcaaacacc aacatccatc0 0 68.76 52.2716.49 Both
chr3L 53 34271862 34271791 Pro CGG tctagcatgt gagatttgtg0 0 76.28 54.2322.05 Both
chr3L 54 30229679 30229608 Met CAT aaatgcaaca ggattatcgc0 0 68.98 38.5930.39 Both
chr3L 55 28736472 28736401 Pro CGG acatacaaca gcgcaagtgg0 0 76.52 54.4622.06 Both
chr3L 56 28657217 28657136 Leu AAG cacgcaccga tgcgaatgaa0 0 65.26 41.7923.47 Both
chr3L 57 28429020 28428948 Arg ACG cttcccaaca tcacttgaac0 0 73.12 53.2819.84 Both
chr3L 58 28172313 28172242 Glu TTC tacacatgcc agtctttttt0 0 64.47 41.4523.02 Eufind
chr3L 59 27208162 27208090 Arg ACG ctgacacaac cgatcgattc0 0 73.12 53.2819.84 Both
chr3L 60 24948593 24948521 Phe GAA catttatctc cactatgtga0 0 82.98 60.0522.93 Both
chr3L 61 24497237 24497164 Pseudo TAA ttattttcac tgtctcgata0 0 21.96 17.934.03 Eufind
chr3L 62 22981229 22981156 Pseudo TAA taatttgagc gctccggctg0 0 22.27 31.16-8.89 Eufind
chr3L 63 20314510 20314438 Val AAC acagatgcaa tttttatcat0 0 80.36 54.9225.44 Both
chr3L 64 20314071 20314000 His GTG atcgtctgta gtgtcaaaat0 0 67.41 42.8224.59 Both
chr3L 65 20297804 20297732 Val AAC acagatgcaa tgtttttttc0 0 80.36 54.9225.44 Both
chr3L 66 20297373 20297302 His GTG atcgtctgta gtgtcacagt0 0 59.48 34.9024.58 Both
chr3L 67 18088605 18088534 Asp GTC gcgaagcaag gcaaagtgtt0 0 74.99 51.1823.81 Both
chr3L 68 13619346 13619275 Pro CGG tatgcatgtc gatggttgga0 0 72.75 54.1918.56 Both
chr3L 69 13619112 13619041 Pro TGG tgtttctatc gtggtatttt0 0 75.74 54.0421.70 Both
chr3L 70 13618911 13618840 Pro AGG tgtttatgtc gtgatatttt0 0 63.62 49.9313.69 Both
chr3L 71 13618710 13618639 Pro CGG tgtttctatc gtgatatttt0 0 72.75 54.1918.56 Both
chr3L 72 13618509 13618438 Pro TGG tgtttatgtc gtgatatttt0 0 75.74 54.0421.70 Both
chr3L 73 13618308 13618236 Pro CGG tatttatgtc gtgatatttt0 0 56.89 41.9414.95 Both
chr3L 74 13618106 13618035 Pro TGG tgtttatgtc gtgatatttt0 0 69.20 52.9416.26 Both
chr3L 75 13617897 13617826 Pro TGG tgtttatgtc gtgatatttt0 0 75.74 54.0421.70 Both
chr3L 76 13617696 13617625 Pro CGG tgtttatgtt gtgatatttt0 0 72.75 54.1918.56 Both
chr3L 77 13617495 13617424 Pro CGG tgtttatgtc gtgatatttt0 0 72.75 54.1918.56 Both
chr3L 78 13281248 13281177 Gln CTG caatcaaata actctctcag0 0 73.26 49.6223.64 Both
chr3L 79 12204478 12204406 Val CAC ttacacatcg gagagaagat0 0 83.88 58.2825.60 Both
chr3L 80 9769013 9768942 Glu TTC acaacacatc aaactttttt0 0 80.27 56.6023.67 Both
chr3L 81 9755825 9755754 Glu TTC acaatgcatc aaactttttt0 0 80.27 56.6023.67 Both
chr3L 82 8240631 8240550 Ser CGA tatgtaagaa tcacagaaag0 0 86.41 56.9029.51 Both
chr3L 83 6441843 6441772 Ala CGC ccttcacaac tatctttttt0 0 75.02 52.9622.06 Both
chr3L 84 6440392 6440321 Ala CGC ccttcacaac tatctttttt0 0 75.02 52.9622.06 Both
chr3L 85 5719903 5719831 Arg ACG atagcaaagg ggatcgtacg0 0 73.12 53.2819.84 Both
chr3L 86 5669855 5669782 Asn GTT cttacagcac gggtaacact0 0 83.46 63.8619.60 Both
chr3L 87 5637949 5637879 Gly GCC acttcacgta tgggttcttt0 0 82.25 63.2718.98 Both
 
chr3R 1 4555079 4555151 Lys CTT gagaacaagt gtgtgaagtg0 0 80.47 57.8122.66 Both
chr3R 2 4981962 4982034 Ala AGC tctctcaaca gaggaaaatc0 0 65.14 44.9420.20 Both
chr3R 3 5039303 5039376 Thr AGT ctctcatcgc gcagcacatc0 0 74.61 59.9514.66 Both
chr3R 4 11156537 11156609 Lys CTT ttcatcaaca cgcagagata0 0 80.47 57.8122.66 Both
chr3R 5 13290398 13290469 Pro AGG ttattcaacg accctgcact0 0 72.57 53.6518.92 Both
chr3R 6 13341329 13341408 Leu TAG aagatatgga atgcgctaat0 0 65.87 41.2924.58 Both
chr3R 7 13440200 13440271 Glu CTC gtgtcaacaa aaaatacttt0 0 79.25 55.7523.50 Both
chr3R 8 13444227 13444298 Glu CTC gtagtaacaa agtcgttttt0 0 79.25 55.7523.50 Both
chr3R 9 13455965 13456036 His GTG tctccttata atgtctcgca0 0 67.41 42.8224.59 Both
chr3R 10 13509144 13509215 Glu CTC ttggtatcag actgcttttt0 0 79.25 55.7523.50 Both
chr3R 11 13521462 13521541 Leu TAG agtcccggag tgatttttga0 0 65.87 41.2924.58 Both
chr3R 12 13539371 13539442 Asp GTC tctctcgact aggaatcttt0 0 74.99 51.1823.81 Both
chr3R 13 17839803 17839968 Leu CAA ctgcacaagt aagagacttt17839841 17839923 61.96 36.9924.97 Eufind
chr3R 14 17865832 17865904 Ala AGC gtattcacca gagaacactt0 0 63.54 39.3524.19 Both
chr3R 15 17867097 17867169 Lys CTT cagatcaaca caacgattct0 0 80.47 57.8122.66 Both
chr3R 16 17901902 17901974 Lys CTT cctgcaacat caggaaactt0 0 80.47 57.8122.66 Both
chr3R 17 19628281 19628353 Arg TCG ttccagctac cacactggga0 0 58.44 44.6813.76 Eufind
chr3R 18 30826562 30826634 Arg TCG agacacaagc aataaaagga0 0 68.87 49.2219.65 Both
chr3R 19 30912631 30912702 Gln TTG acttgcatac gtcccgagtc0 0 72.01 47.3524.66 Both
chr3R 20 30913579 30913650 Cys GCA atgtaagtgt cgcgtgaagc0 0 76.52 57.4519.07 Both
chr3R 21 30915644 30915715 Gln TTG cggcgtcaac cttttttcgc0 0 69.56 44.9024.66 Both
chr3R 22 31273547 31273619 Lys CTT agagcaaccg ctgaagaaat0 0 80.47 57.8122.66 Both
chr3R 23 32850262 32850332 Gly GCC tcttcaacgc ttggaagaca0 0 82.25 63.2718.98 Both
chr3R 24 33021487 33021557 Gly GCC tctctaacaa accgatattt0 0 82.25 63.2718.98 Both
chr3R 25 33710443 33710516 Thr AGT gaaagcaagc aagcgttgga0 0 74.61 59.9514.66 Both
chr3R 26 44892785 44892856 Pro AGG tcatacaacg acctctgaga0 0 72.57 53.6518.92 Both
chr3R 27 45170591 45170517 Pseudo TTA tctggcgacc tgtcctcata0 0 20.86 20.330.53 Eufind
chr3R 28 39041184 39041112 Lys TTT aatctgtgca tggtaatgtt0 0 81.91 58.1323.78 Both
chr3R 29 38713479 38713407 Lys TTT ctatccatgg gtgatgaaac0 0 81.91 58.1323.78 Both
chr3R 30 37767492 37767421 Met CAT ttcccaacca tgttcaaacg0 0 65.36 38.3127.05 Both
chr3R 31 33724970 33724897 Thr AGT ccttcacaac aagtgatgtg0 0 74.61 59.9514.66 Both
chr3R 32 33706356 33706286 Gly GCC acagacacaa tacttctatt0 0 82.25 63.2718.98 Both
chr3R 33 30915916 30915845 Cys GCA tctctcaagt cgcgtgaagc0 0 76.52 57.4519.07 Both
chr3R 34 30913845 30913774 Gln TTG aggggcgaac cttttttcgc0 0 69.56 44.9024.66 Both
chr3R 35 27632209 27632137 Ala AGC ccttcaacaa gggacatttt0 0 63.64 42.0721.57 Both
chr3R 36 26006448 26006376 Ala AGC cttcaaccac agagagcttt0 0 65.14 44.9420.20 Both
chr3R 37 17900289 17900217 Ala AGC gatgtacaag acgaagtggt0 0 65.14 44.9420.20 Both
chr3R 38 17895633 17895560 Asn GTT gagcgtaagt cagagctttt0 0 83.46 63.8619.60 Both
chr3R 39 17866758 17866686 Ala AGC gtatctacca gagaacactt0 0 63.54 39.3524.19 Both
chr3R 40 17865495 17865423 Lys CTT cagaacaaca caacgattct0 0 80.47 57.8122.66 Both
chr3R 41 14573148 14573077 Gln CTG ctctcagcga aacactcacg0 0 71.61 47.9723.64 Both
chr3R 42 13716929 13716858 Asp GTC ttcaaacatg gaaaatcttt0 0 74.99 51.1823.81 Both
chr3R 43 13549101 13549030 Gln CTG agtttacatc accaggctaa0 0 72.37 47.7224.65 Both
chr3R 44 13548279 13548208 Cys GCA aattcttcat cgcggaaagc0 0 76.52 57.4519.07 Both
chr3R 45 13455434 13455363 His GTG caccccgata atgctgcaga0 0 67.41 42.8224.59 Both
chr3R 46 13387438 13387367 Pro AGG tctctcaacg accgcttgaa0 0 72.57 53.6518.92 Both
chr3R 47 13317170 13317099 Cys GCA aagtatcaac ctgagaagaa0 0 76.52 57.4519.07 Both
chr3R 48 13316495 13316423 Val AAC tacactatct tgtgattttt0 0 82.09 56.6625.43 Both
chr3R 49 13280619 13280547 Val AAC tccgacacat ggcgaaactt0 0 82.09 56.6625.43 Both
chr3R 50 12956429 12956358 Pro AGG atcttcatcg accgtcatat0 0 67.25 54.5712.68 Both
chr3R 51 12752402 12752330 Ala AGC cttgtaatac gtggaacttt0 0 59.55 37.9821.57 Both
chr3R 52 11753139 11753066 Ile AAT gcatgcaagc gagagtgtct0 0 77.68 56.0221.66 Both
chr3R 53 10173556 10173484 Arg TCG acccaacaac ctctggagct0 0 68.87 49.2219.65 Both
chr3R 54 9550053 9549982 Gly TCC ccctcaacaa gcgatctttt0 0 72.21 53.2119.00 Both
chr3R 55 6981083 6981012 Trp CCA ccgcatcgga atcagcgatt0 0 75.41 53.2622.15 Both
chr3R 56 6928067 6927995 Lys CTT gttatcaaca ctgtgaagta0 0 80.47 57.8122.66 Both
chr3R 57 5038778 5038707 Thr CGT ctcccagcgc agagttgtga0 0 82.08 57.6424.44 Both
chr3R 58 4551785 4551713 Lys CTT aaatctaaca cacggtaatg0 0 80.47 57.8122.66 Both
 

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chrX 1 13307851 13307922 Glu CTC attagtaaca gcatacgttt0 0 79.86 56.8323.03 Both
chrX 2 13578639 13578567 Pseudo GTT cgctcaacgg cgaggggggt0 0 23.09 27.27-4.18 Eufind
chrX 3 13307540 13307468 Met CAT attaaacatc ggtgtgtgta0 0 79.42 58.6720.75 Both
chrX 4 9742899 9742827 Pseudo CGT ttgctgggca tcgtccatat0 0 24.54 29.92-5.38 Eufind
chrX 5 7949565 7949492 Pseudo TAA ggtgagatgc tgccgccata0 0 22.18 20.321.86 Eufind


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.