GtRNAdb

tRNAscan-SE Analysis of Ailuropoda melanoleuca (panda) (BGI-Shenzhen AilMel 1.0 Dec 2009)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA1461
Selenocysteine tRNAs (TCA)2
Possible suppressor tRNAs (CTA,TTA)11
tRNAs with undetermined
or unknown isotypes
2
Predicted pseudogenes0
Total tRNAs1476


Intron Summary

tRNAs with introns
96
Pro
CGG
1
Pro
TGG
1
Ser
TGA
1
Arg
GCG
1
Arg
TCG
3
Arg
CCT
2
Arg
TCT
5
Leu
CAG
1
Leu
CAA
9
Asn
GTT
1
Lys
CTT
45
Lys
TTT
3
Gln
CTG
3
Gln
TTG
3
Ile
TAT
5
Tyr
GTA
11
Supres
CTA
1


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
17
GGC
 
CGC
5
TGC
9
31
GlyACC
 
GCC
10
CCC
7
TCC
7
24
ProAGG
9
GGG
 
CGG
5
TGG
11
25
ThrAGT
10
GGT
 
CGT
10
TGT
9
29
ValAAC
10
GAC
 
CAC
9
TAC
7
26

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
10
GGA
 
CGA
4
TGA
6
ACT
2
GCT
13
 
 
 
 
35
ArgACG
8
GCG
1
CCG
7
TCG
84
 
 
 
 
CCT
45
TCT
17
162
LeuAAG
7
GAG
 
CAG
7
TAG
5
 
 
 
 
CAA
9
TAA
5
33

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
11
 
 
 
 
11
AsnATT
6
GTT
28
 
 
 
 
34
Lys 
 
 
 
CTT
772
TTT
55
827
AspATC
1
GTC
11
 
 
 
 
12
Glu 
 
 
 
CTC
37
TTC
11
48
HisATG
 
GTG
8
 
 
 
 
8
Gln 
 
 
 
CTG
25
TTG
43
68

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
12
GAT
 
 
 
TAT
6
18
Met 
 
 
 
CAT
24
 
 
24
TyrATA
 
GTA
11
 
 
 
 
11
Supres 
 
 
 
CTA
10
TTA
1
11
CysACA
 
GCA
25
 
 
 
 
25
Trp 
 
 
 
CCA
10
 
 
10
SelCys 
 
 
 
 
 
TCA
2
2

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.