Genomic tRNA Database: Aspergillus fumigatus

tRNAscan-SE Analysis of Aspergillus fumigatus

>> Main Overview

>> tRNAs by Isotype

>> tRNAs by Locus

>> Secondary Structures

>> tRNA Alignments

>> FASTA Seqs

>> Run Options/Stats

>> Analysis Notes

>> Genome DB

>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 178
 Selenocysteine tRNAs (TCA) 0
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 1
 Predicted pseudogenes 0
 Total tRNAs 179
 
 
Intron Summary tRNAs with introns 
 67 Ala 
 CGC 
 1 Ala 
 TGC 
 2 Gly 
 CCC 
 1 Pro 
 AGG 
 5 Pro 
 CGG 
 2 Thr 
 CGT 
 1 Thr 
 TGT 
 3 Val 
 CAC 
 2 Ser 
 CGA 
 2 Ser 
 TGA 
 1 Arg 
 CCT 
 1 Leu 
 AAG 
 6 Leu 
 CAG 
 4 Leu 
 CAA 
 2 Leu 
 TAA 
 1 Phe 
 GAA 
 5 Asn 
 GTT 
 4 Lys 
 TTT 
 1 Asp 
 GTC 
 9 His 
 GTG 
 1
 Gln 
 TTG 
 2 Ile 
 TAT 
 1 Met 
 CAT 
 4 Tyr 
 GTA 
 5 Cys 
 GCA 
 1  

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 8 GGC 
   CGC 
 2 TGC 
 3 13
 Gly ACC 
   GCC 
 11 CCC 
 1 TCC 
 3 15
 Pro AGG 
 5 GGG 
   CGG 
 2 TGG 
 2 9
 Thr AGT 
 6 GGT 
   CGT 
 2 TGT 
 3 11
 Val AAC 
 7 GAC 
   CAC 
 2 TAC 
 1 10  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 5 GGA 
   CGA 
 2 TGA 
 1 ACT 
   GCT 
 4   
     
   12
 Arg ACG 
 9 GCG 
   CCG 
 2 TCG 
 2   
     
   CCT 
 2 TCT 
 1 16
 Leu AAG 
 6 GAG 
   CAG 
 4 TAG 
     
     
   CAA 
 2 TAA 
 1 13
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
   GAA 
 5   
     
   5
 Asn ATT 
   GTT 
 5   
     
   5
 Lys   
     
   CTT 
 8 TTT 
 1 9
 Asp ATC 
   GTC 
 9   
     
   9
 Glu   
     
   CTC 
 8 TTC 
 4 12
 His ATG 
   GTG 
 4   
     
   4
 Gln   
     
   CTG 
 6 TTG 
 2 8  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 7 GAT 
     
   TAT 
 1 8
 Met   
     
   CAT 
 8   
   8
 Tyr ATA 
   GTA 
 5   
     
   5
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
   GCA 
 3   
     
   3
 Trp   
     
   CCA 
 3   
   3
 SelCys   
     
     
   TCA 
   0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.