GtRNAdb

tRNAscan-SE Analysis of Aspergillus fumigatus

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA178
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
1
Predicted pseudogenes0
Total tRNAs179


Intron Summary

tRNAs with introns
67
Ala
CGC
1
Ala
TGC
2
Gly
CCC
1
Pro
AGG
5
Pro
CGG
2
Thr
CGT
1
Thr
TGT
3
Val
CAC
2
Ser
CGA
2
Ser
TGA
1
Arg
CCT
1
Leu
AAG
6
Leu
CAG
4
Leu
CAA
2
Leu
TAA
1
Phe
GAA
5
Asn
GTT
4
Lys
TTT
1
Asp
GTC
9
His
GTG
1
Gln
TTG
2
Ile
TAT
1
Met
CAT
4
Tyr
GTA
5
Cys
GCA
1
 


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
8
GGC
 
CGC
2
TGC
3
13
GlyACC
 
GCC
11
CCC
1
TCC
3
15
ProAGG
5
GGG
 
CGG
2
TGG
2
9
ThrAGT
6
GGT
 
CGT
2
TGT
3
11
ValAAC
7
GAC
 
CAC
2
TAC
1
10

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
5
GGA
 
CGA
2
TGA
1
ACT
 
GCT
4
 
 
 
 
12
ArgACG
9
GCG
 
CCG
2
TCG
2
 
 
 
 
CCT
2
TCT
1
16
LeuAAG
6
GAG
 
CAG
4
TAG
 
 
 
 
 
CAA
2
TAA
1
13

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
5
 
 
 
 
5
AsnATT
 
GTT
5
 
 
 
 
5
Lys 
 
 
 
CTT
8
TTT
1
9
AspATC
 
GTC
9
 
 
 
 
9
Glu 
 
 
 
CTC
8
TTC
4
12
HisATG
 
GTG
4
 
 
 
 
4
Gln 
 
 
 
CTG
6
TTG
2
8

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
7
GAT
 
 
 
TAT
1
8
Met 
 
 
 
CAT
8
 
 
8
TyrATA
 
GTA
5
 
 
 
 
5
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
3
 
 
 
 
3
Trp 
 
 
 
CCA
3
 
 
3
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.