GtRNAdb

tRNAscan-SE Analysis of Bacillus subtilis

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 11462 11538 Ile GAT aagttaagat tcttatataa0 0 102.39 81.8420.55 Both
chr 2 11550 11625 Ala TGC cttatataac acgtgttctt0 0 92.94 75.7217.22 Both
chr 3 22290 22382 Ser TGA ttgtcgatac tattgatttt0 0 71.03 39.2231.81 tRNAscan
chr 4 31930 32006 Ile GAT aagttaagat tcttatataa0 0 102.39 81.8420.55 Both
chr 5 32018 32093 Ala TGC cttatataac acgtgttctt0 0 92.94 75.7217.22 Both
chr 6 70179 70255 Met CAT aaaacaatat tatttgtttg0 0 83.99 71.4712.52 Both
chr 7 70265 70336 Glu TTC atatttgttt tcctaacaaa0 0 70.15 45.1025.05 Both
chr 8 95372 95447 Val TAC gtgcaattat ttatgccggt0 0 96.46 76.7519.71 Both
chr 9 95452 95527 Thr TGT ccaccattat cttttatatg0 0 91.03 80.1710.86 Both
chr 10 95564 95639 Lys TTT tcttgtagaa ttttacgcgg0 0 98.67 74.2324.44 Both
chr 11 95646 95728 Leu TAG accattttac ttatatagga0 0 69.29 46.1123.18 Both
chr 12 95769 95843 Gly GCC catcctgtct actataccat0 0 94.93 73.1821.75 Both
chr 13 95858 95943 Leu TAA taccatccac ttatgttttg0 0 68.21 39.9828.23 Both
chr 14 95953 96029 Arg ACG attatgtttt tatcttttaa0 0 81.43 62.4818.95 Both
chr 15 96057 96133 Pro TGG gataggaaat tttttttatg0 0 94.72 72.3822.34 Both
chr 16 96143 96218 Ala TGC atttttttat aaagttttta0 0 92.94 75.7217.22 Both
chr 17 165753 165824 Asn GTT tatatctcat cattgcttcc0 0 80.02 53.1126.91 Both
chr 18 165829 165901 Thr GGT gcggagcatt taaatgtatt0 0 75.20 48.6226.58 Both
chr 19 165958 166032 Gly GCC attgcgatat tttacctaac0 0 94.93 73.1821.75 Both
chr 20 166063 166139 Arg ACG aaattgaatt tatcttttaa0 0 81.43 62.4818.95 Both
chr 21 166167 166243 Pro TGG gataggaaat ttttttatgg0 0 94.72 72.3822.34 Both
chr 22 166252 166327 Ala TGC cattttttat aaagttttta0 0 92.94 75.7217.22 Both
chr 23 194197 194268 Glu TTC agaacacaac tttggaggat0 0 48.71 37.9010.81 Eufind
chr 24 194272 194347 Val TAC gtcaccattt tcttgccggt0 0 96.46 76.7519.71 Both
chr 25 194352 194424 Thr TGT ccaccatctt ctgttttttc0 0 82.73 71.8910.84 Both
chr 26 194447 194531 Tyr GTA aattttatgt ttattgggct0 0 78.86 49.2329.63 Both
chr 27 194536 194610 Gln TTG ccaccattat cagacacctt0 0 68.29 43.1925.10 Both
chr 28 528265 528339 Asn GTT gtctcattat tattggagaa0 0 87.08 58.7928.29 Both
chr 29 528344 528434 Ser GCT gagccatatt taagatttcg0 0 71.43 35.2536.18 Both
chr 30 528464 528535 Glu TTC ctcaaccatc ttccatttcg0 0 70.15 45.1025.05 Both
chr 31 528547 528621 Gln TTG tccatttcgt tttttatttt0 0 75.97 50.8725.10 Both
chr 32 528648 528723 Lys TTT ctaatagtaa tttgtctttt0 0 98.67 74.2324.44 Both
chr 33 528735 528816 Leu TAG ttgtcttttt ctttatttac0 0 73.07 48.5024.57 Both
chr 34 528897 528983 Leu GAG taatgatcac atgataccaa0 0 53.73 26.8726.86 Both
chr 35 634657 634733 Arg ACG cgctcaataa tataagatac0 0 81.43 62.4818.95 Both
chr 36 634747 634820 Gly TCC aagataccac ttattgaatg0 0 78.55 52.0426.51 Both
chr 37 639815 639891 Met CAT cttttatcat aatatatggt0 0 90.17 64.1126.06 Both
chr 38 639952 640028 Asp GTC atacaaatat ttaatgtaaa0 0 95.80 75.3620.44 Both
chr 39 950916 950990 Asn GTT cagacttcat ttattggaga0 0 88.32 61.3926.93 Both
chr 40 950996 951087 Ser GGA agccattatt ctgatactta0 0 64.16 28.5135.65 Both
chr 41 951122 951193 Glu TTC tgaaagtctg ttatatgatg0 0 70.15 45.1025.05 Both
chr 42 951203 951278 Val TAC attatatgat ttatatcatc0 0 90.98 75.5415.44 Both
chr 43 951288 951364 Met CAT attatatcat aattttaaaa0 0 90.17 64.1126.06 Both
chr 44 951376 951452 Asp GTC attttaaaat tttgaatact0 0 95.80 75.3620.44 Both
chr 45 951465 951540 Phe GAA tgaatactta cctatgccgg0 0 91.60 76.0515.55 Both
chr 46 951546 951618 Thr TGT caccacctat ctgttttttc0 0 76.44 70.725.72 Both
chr 47 951641 951725 Tyr GTA aatttaatgt tttatagggg0 0 78.86 49.2329.63 Both
chr 48 951731 951804 Trp CCA caccatttat aatttatgac0 0 65.41 43.8121.60 Both
chr 49 951829 951904 His GTG tgagattatg tattatcatt0 0 72.51 51.3121.20 Both
chr 50 951914 951985 Gln TTG atattatcat tctcactttt0 0 67.67 42.5925.08 Both
chr 51 952035 952109 Gly GCC cattaaaaat attacggcgg0 0 94.93 73.1821.75 Both
chr 52 952115 952185 Cys GCA ctccaattac tcttattgcc0 0 67.07 40.3426.73 Both
chr 53 952193 952281 Leu TAA ccttcttatt attttactta0 0 76.51 48.2528.26 Both
chr 54 952547 952628 Leu CAA cgtaaaactt tactggaaaa0 0 55.51 31.5523.96 Both
chr 55 966402 966475 Gly TCC aatcacaaat tacatacgtt0 0 78.55 52.0426.51 Both
chr 56 1262101 1262173 Val GAC tacatatcat tagcttaaac0 0 71.64 42.7828.86 Both
chr 57 2563122 2563192 Gln TTG ttagattcaa tttctggaca0 0 65.47 42.9222.55 Both
chr 58 4154232 4154157 Lys TTT acatctttaa tttcgtgaag0 0 98.67 74.2324.44 Both
chr 59 4154147 4154076 Glu TTC atttcgtgaa ttgatttact0 0 70.15 45.1025.05 Both
chr 60 4153994 4153918 Asp GTC attactgtaa ttttacttta0 0 95.80 75.3620.44 Both
chr 61 4153882 4153810 Phe GAA taaaacattt cttaccaaac0 0 89.60 68.9420.66 Both
chr 62 3544994 3544919 Arg CCG cagtctatat tccaatagaa0 0 66.66 42.9723.69 Both
chr 63 3193566 3193494 Ala GGC cgttacatac tacctttaaa0 0 77.43 56.3621.07 Both
chr 64 3172844 3172769 Val TAC agtgcaatat tttttcatta0 0 96.46 76.7519.71 Both
chr 65 3172736 3172661 Thr TGT ttacatatat cttttatatg0 0 91.03 80.1710.86 Both
chr 66 3172623 3172548 Lys TTT attgtaagaa tttacatgtt0 0 98.67 74.2324.44 Both
chr 67 3172537 3172451 Leu CAG tttacatgtt tttctgcgga0 0 72.49 46.1126.38 Both
chr 68 3172445 3172371 Gly GCC caccatttct actataccat0 0 94.93 73.1821.75 Both
chr 69 3172356 3172271 Leu TAA taccatccac ttaagttttg0 0 68.21 39.9828.23 Both
chr 70 3172261 3172185 Arg ACG attaagtttt tgatctatat0 0 81.43 62.4818.95 Both
chr 71 3172169 3172093 Pro TGG tatatgaaat ttcttggggc0 0 94.72 72.3822.34 Both
chr 72 3172087 3172015 Ala TGC gaccattctt cttgatttca0 0 84.64 67.4517.19 Both
chr 73 3171994 3171918 Met CAT aaaactattt atggaccttt0 0 83.99 71.4712.52 Both
chr 74 3171915 3171839 Met CAT cgctaccaat ctatacggag0 0 97.54 71.8725.67 Both
chr 75 3171832 3171741 Ser TGA accactatac tacatattcc0 0 74.88 40.3534.53 Both
chr 76 3171723 3171647 Met CAT tcctaatcat aattttaaaa0 0 90.17 64.1126.06 Both
chr 77 3171635 3171559 Asp GTC attttaaaat tttaaatact0 0 95.80 75.3620.44 Both
chr 78 3171546 3171471 Phe GAA taaatactta tttatcaata0 0 97.89 77.2220.67 Both
chr 79 3171453 3171378 His GTG atatgctttg aataaaaatt0 0 74.51 53.3121.20 Both
chr 80 3171367 3171294 Gly TCC aataaaaatt tttctatatc0 0 81.36 57.6223.74 Both
chr 81 3171278 3171202 Ile GAT atatcgtcat tgacttttgt0 0 102.00 81.1920.81 Both
chr 82 3171191 3171117 Asn GTT tgacttttgt aatggagaag0 0 87.08 58.7928.29 Both
chr 83 3171113 3171023 Ser GCT ggagccaaat tatgattaca0 0 72.43 36.5735.86 Both
chr 84 3170997 3170926 Glu TTC cataattatc tccagaagcc0 0 70.15 45.1025.05 Both
chr 85 2898955 2898882 Arg TCT aacaaaacgt taccaaaaga0 0 83.12 58.1624.96 Both
chr 86 2002557 2002485 Arg CCT aataccaaaa ttatattcac0 0 69.33 34.9634.37 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.