GtRNAdb

tRNAscan-SE Analysis of Bacillus thuringiensis Al Hakam

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 10993 11069 Ile GAT caatttgtat tacaatttgg0 0 101.21 79.6821.53 Both
chr 2 11078 11153 Ala TGC catacaattt aaaagctatt0 0 93.92 76.7017.22 Both
chr 3 21776 21868 Ser TGA atgtcaatat gatataattg0 0 72.57 40.9231.65 Both
chr 4 30793 30869 Ile GAT caatttgtat tacaatttgg0 0 101.21 79.6821.53 Both
chr 5 30878 30953 Ala TGC catacaattt aaaagctatt0 0 93.92 76.7017.22 Both
chr 6 64436 64509 Met CAT aagacgacat tatttaattt0 0 75.69 63.2012.49 Both
chr 7 64523 64594 Glu TTC ttaatttaac tctaaaaaga0 0 71.01 45.9625.05 Both
chr 8 87277 87352 Val TAC caggcaattc tttagccgac0 0 97.03 78.5918.44 Both
chr 9 87357 87432 Thr TGT ccaccattta gtttttattg0 0 95.44 77.5417.90 Both
chr 10 87446 87521 Lys TTT tttattgtaa tttttaatga0 0 98.67 74.2324.44 Both
chr 11 87537 87617 Leu TAG aatgaaatat cttttaatga0 0 66.65 43.6123.04 Both
chr 12 87647 87721 Gly GCC aacatgtctt attttcaata0 0 88.86 65.7023.16 Both
chr 13 87738 87826 Leu TAA aatatgacat tatgcgcccg0 0 71.28 45.9225.36 Both
chr 14 87830 87903 Arg ACG ggcaccatat ttttctttcg0 0 69.97 55.6314.34 Both
chr 15 87912 87985 Pro TGG cgttttcttt tacttgtttg0 0 85.68 64.9020.78 Both
chr 16 87995 88070 Ala TGC atacttgttt aaaaagttct0 0 93.92 76.7017.22 Both
chr 17 156046 156120 Asn GTT ctaatattat ttatgcttcc0 0 88.32 61.3926.93 Both
chr 18 156125 156197 Thr GGT gagccattat tgggaatagg0 0 78.48 52.3826.10 Both
chr 19 156222 156296 Glu TTC aaactttttt cttttggagg0 0 79.30 54.2325.07 Both
chr 20 156302 156377 Val TAC caccactttt tatatattta0 0 97.03 78.5918.44 Both
chr 21 156395 156478 Tyr GTA ttaaaatgtc ttttctttaa0 0 77.59 48.0029.59 Both
chr 22 156544 156618 Gln TTG taaatattaa tttacgagcc0 0 78.60 51.9326.67 Both
chr 23 156624 156699 Lys TTT agccatttac ttttcgcgga0 0 98.67 74.2324.44 Both
chr 24 156705 156776 Gly GCC caccattttc taattactaa0 0 80.56 57.4223.14 Both
chr 25 156787 156859 Ala TGC taattactaa tctaatagag0 0 85.62 68.4317.19 Both
chr 26 257007 257081 Asn GTT tctttattat tacagagaag0 0 88.32 61.3926.93 Both
chr 27 257085 257175 Ser GCT ggagccatac ttcatattgg0 0 67.93 29.7638.17 Both
chr 28 257184 257258 Glu TTC cattcatatt cttcggagga0 0 79.30 54.2325.07 Both
chr 29 257263 257338 Val TAC tcaccacttc taatattata0 0 97.03 78.5918.44 Both
chr 30 257385 257460 Asp GTC aagattaaat ttttaacttc0 0 76.06 54.5321.53 Both
chr 31 257548 257622 Gln TTG agtatttcga tttacgagcc0 0 78.60 51.9326.67 Both
chr 32 257628 257700 Lys TTT agccatttac cttttgtttt0 0 90.38 65.9524.43 Both
chr 33 257717 257802 Leu GAG ttttttccgc aaaaatcttt0 0 57.19 28.1129.08 Both
chr 34 257898 257974 Arg ACG tcatgaataa attacgggaa0 0 78.27 63.9114.36 Both
chr 35 257979 258055 Pro TGG gcgccaatta cgcgggtgta0 0 93.98 73.1720.81 Both
chr 36 258057 258127 Gly TCC tcccgaccac tttagttctt0 0 71.78 43.0828.70 Both
chr 37 263000 263076 Met CAT tttatatcat aatggtcccg0 0 85.35 60.1225.23 Both
chr 38 263080 263155 Asp GTC gcaaccaaat ttttatataa0 0 76.06 54.5321.53 Both
chr 39 539300 539374 Asn GTT gcaatattat ttggagagct0 0 86.53 59.5926.94 Both
chr 40 539377 539468 Ser GGA cggagccatt taggatttat0 0 63.66 27.8035.86 Both
chr 41 539486 539560 Glu TTC tataatattt cttttggagg0 0 79.30 54.2325.07 Both
chr 42 539566 539641 Val TAC caccactttt tataaactat0 0 97.03 78.5918.44 Both
chr 43 539666 539742 Met CAT ataatattat aatggtcccg0 0 85.35 60.1225.23 Both
chr 44 539746 539821 Asp GTC gcaaccaaat ttttaataag0 0 76.06 54.5321.53 Both
chr 45 539831 539906 Phe GAA attttaataa tttactttaa0 0 92.86 69.9122.95 Both
chr 46 539925 540000 Thr TGT aataaaatac tgtaagtttc0 0 96.17 78.8917.28 Both
chr 47 540011 540094 Tyr GTA tgtaagtttc tttacatagg0 0 77.59 48.0029.59 Both
chr 48 540102 540175 Trp CCA ccatttacat aatatattta0 0 61.92 35.8726.05 Both
chr 49 540195 540270 His GTG acacaacatg tttttatttt0 0 74.61 57.9916.62 Both
chr 50 540334 540408 Gln TTG aagaattcga tttttgcgga0 0 78.60 51.9326.67 Both
chr 51 540414 540488 Gly GCC agccattttt gtaaaatttt0 0 88.86 65.7023.16 Both
chr 52 540503 540573 Cys GCA aattttatat tttcttttgt0 0 71.27 44.0127.26 Both
chr 53 540584 540668 Leu CAA tttcttttgt cgaacggcgt0 0 60.08 29.9930.09 Both
chr 54 552778 552851 Gly TCC tttcatattt aattttatta0 0 80.08 51.3528.73 Both
chr 55 766825 766900 Val TAC caggcaaaat tatatgtcgg0 0 97.03 78.5918.44 Both
chr 56 766909 766992 Tyr GTA catatatgtc ttcttaatta0 0 77.59 48.0029.59 Both
chr 57 767004 767078 Gln TTG tcttaattaa ttaagagcca0 0 78.60 51.9326.67 Both
chr 58 767083 767158 Lys TTT cagccattaa ttttaacaaa0 0 98.67 74.2324.44 Both
chr 59 767173 767253 Leu TAG aacaaaatat cttttaataa0 0 66.65 43.6123.04 Both
chr 60 767283 767357 Gly GCC tacatgtctt attttcaata0 0 88.86 65.7023.16 Both
chr 61 767374 767462 Leu TAA aatatgacat tatgcgcccg0 0 71.28 45.9225.36 Both
chr 62 767466 767539 Arg ACG ggcaccatat cttttattaa0 0 69.97 55.6314.34 Both
chr 63 767550 767623 Pro TGG cttttattaa tattcccaaa0 0 85.68 64.9020.78 Both
chr 64 767640 767712 Ala TGC caaaaaacat ctttatttat0 0 85.62 68.4317.19 Both
chr 65 767733 767825 Ser TGA tatatgtctc ttttcttttt0 0 71.21 40.5630.65 Both
chr 66 767881 767973 Ser TGA tttccttcat ttttttctaa0 0 72.21 40.2431.97 tRNAscan
chr 67 768001 768077 Met CAT attttatcat aatggtcccg0 0 85.35 60.1225.23 Both
chr 68 768081 768156 Asp GTC gcaaccaaat tttatgttgg0 0 76.06 54.5321.53 Both
chr 69 768165 768240 Phe GAA catttatgtt tttttttatg0 0 92.86 69.9122.95 Both
chr 70 768250 768322 Thr TGT atttttttat tcctttaggg0 0 87.15 69.2617.89 Both
chr 71 768329 768399 Trp CCA ggcatccttt taaagtatat0 0 53.62 27.5926.03 Both
chr 72 768410 768486 Ile GAT taaagtatat tatatattat0 0 101.21 79.6821.53 Both
chr 73 768497 768571 Asn GTT tatatattat tggcccgttg0 0 88.32 61.3926.93 Both
chr 74 768573 768644 Glu TTC gcggagccat taaaaaaaga0 0 71.01 45.9625.05 Both
chr 75 5236842 5236767 Lys TTT tggtgagtat ttttattttt0 0 98.67 74.2324.44 Both
chr 76 5236753 5236682 Glu TTC tatttttcgt tgttttttta0 0 71.01 45.9625.05 Both
chr 77 5236660 5236585 Asp GTC gtttattttt cttttgttta0 0 76.06 54.5321.53 Both
chr 78 5236543 5236471 Phe GAA atatagtttt ctctcaggat0 0 84.57 61.6422.93 Both
chr 79 4880634 4880559 Arg CCG ttataatcat tcgaaaagtc0 0 62.08 41.2920.79 Both
chr 80 4668188 4668113 Val TAC ccaggcaaat tttagccgac0 0 97.03 78.5918.44 Both
chr 81 4668108 4668033 Thr TGT ccaccattta gaaatcatgg0 0 95.44 77.5417.90 Both
chr 82 4668023 4667948 His GTG agaaatcatg tttttcttaa0 0 74.61 57.9916.62 Both
chr 83 4667925 4667845 Leu TAG aaattaatat cttttaataa0 0 67.96 46.1521.81 Both
chr 84 4667815 4667741 Gly GCC tacatgtctt attttcaata0 0 88.86 65.7023.16 Both
chr 85 4667724 4667636 Leu TAA aatatgacat tatgcgcccg0 0 71.28 45.9225.36 Both
chr 86 4667632 4667559 Arg ACG ggcaccatat cttttattaa0 0 69.97 55.6314.34 Both
chr 87 4667548 4667475 Pro TGG cttttattaa tattcccaaa0 0 85.68 64.9020.78 Both
chr 88 4667458 4667385 Ala TGC caaaaaacat cttattttaa0 0 76.07 58.8817.19 Eufind
chr 89 4667364 4667288 Met CAT tatcatttat taaaggacct0 0 83.99 71.4712.52 Both
chr 90 4667283 4667207 Met CAT ctaccataaa ttagaagttt0 0 96.69 71.0225.67 Both
chr 91 4667189 4667097 Ser TGA tttatatctc ttttttctta0 0 72.21 40.2431.97 Both
chr 92 4667069 4666993 Met CAT attttatcgt aggtcccgtg0 0 89.08 63.8525.23 Both
chr 93 4666991 4666916 Asp GTC ccgcaaccaa tttttacata0 0 76.06 54.5321.53 Both
chr 94 4666903 4666828 Phe GAA tttacataaa ttttgaagtc0 0 92.86 69.9122.95 Both
chr 95 4666813 4666738 Thr TGT gaagtcgcaa ctttcaaaat0 0 96.17 78.8917.28 Both
chr 96 4666727 4666652 Lys TTT ctttcaaaat tttacaattt0 0 98.67 74.2324.44 Both
chr 97 4666638 4666568 Gly TCC acaatttaat tttcaattat0 0 71.78 43.0828.70 Both
chr 98 4666557 4666481 Ile GAT tttcaattat taattgttcc0 0 101.21 79.6821.53 Both
chr 99 4666473 4666399 Asn GTT ccataattgt tatttataga0 0 88.32 61.3926.93 Both
chr 100 4666391 4666301 Ser GCT ccatatttat gtaattggcc0 0 67.93 29.7638.17 Both
chr 101 4666294 4666223 Glu TTC gccagtaatt tactaaaaga0 0 71.01 45.9625.05 Both
chr 102 4294741 4294668 Gly TCC aataacatat tgtcccagta0 0 80.08 51.3528.73 Both
chr 103 4081704 4081631 Met CAT acataattgt tatccatttc0 0 88.27 62.5225.75 Both
chr 104 1292474 1292402 Val GAC gcattttgaa ttatttacaa0 0 61.20 42.1019.10 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.