GtRNAdb

tRNAscan-SE Analysis of Brachypodium distachyon (JGI v1.0 8X)

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>> Genome Seq
tRNA Gene Summary




tRNAs Decoding Standard 20 AA639
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
7
Predicted pseudogenes15
Total tRNAs661


Intron Summary

tRNAs with introns
36
Thr
AGT
1
Val
AAC
2
Ser
GCT
3
Arg
CCT
1
Met
CAT
17
Tyr
GTA
12


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
19
GGC
 
CGC
11
TGC
12
42
GlyACC
 
GCC
27
CCC
9
TCC
9
45
ProAGG
15
GGG
 
CGG
8
TGG
18
41
ThrAGT
9
GGT
3
CGT
6
TGT
10
28
ValAAC
15
GAC
3
CAC
11
TAC
5
34

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
11
GGA
4
CGA
5
TGA
10
ACT
 
GCT
18
 
 
 
 
48
ArgACG
16
GCG
1
CCG
6
TCG
5
 
 
 
 
CCT
9
TCT
9
46
LeuAAG
14
GAG
 
CAG
8
TAG
10
 
 
 
 
CAA
15
TAA
4
51

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
18
 
 
 
 
18
AsnATT
 
GTT
16
 
 
 
 
16
Lys 
 
 
 
CTT
18
TTT
12
30
AspATC
 
GTC
25
 
 
 
 
25
Glu 
 
 
 
CTC
19
TTC
15
34
HisATG
3
GTG
21
 
 
 
 
24
Gln 
 
 
 
CTG
11
TTG
15
26

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
20
GAT
2
 
 
TAT
4
26
Met 
 
 
 
CAT
55
 
 
55
TyrATA
1
GTA
17
 
 
 
 
18
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
14
 
 
 
 
14
Trp 
 
 
 
CCA
18
 
 
18
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.