GtRNAdb

tRNAscan-SE Analysis of Bos taurus (cow) (UMD 3.1 Nov 2009)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA4011
Selenocysteine tRNAs (TCA)29
Possible suppressor tRNAs (CTA,TTA)17
tRNAs with undetermined
or unknown isotypes
7
Predicted pseudogenes0
Total tRNAs4064


Intron Summary

tRNAs with introns
57
Ala
AGC
1
Gly
ACC
2
Gly
GCC
1
Gly
CCC
5
Gly
TCC
3
Thr
CGT
1
Arg
TCT
6
Leu
AAG
1
Leu
TAG
1
Leu
CAA
6
Lys
CTT
1
Glu
CTC
1
Glu
TTC
1
Gln
CTG
1
Gln
TTG
1
Ile
TAT
5
Tyr
GTA
17
Cys
GCA
2
Trp
CCA
1


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
31
GGC
2
CGC
16
TGC
35
84
GlyACC
20
GCC
63
CCC
1295
TCC
391
1769
ProAGG
13
GGG
 
CGG
4
TGG
9
26
ThrAGT
14
GGT
1
CGT
7
TGT
10
32
ValAAC
20
GAC
 
CAC
39
TAC
21
80

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
13
GGA
32
CGA
7
TGA
7
ACT
4
GCT
19
 
 
 
 
82
ArgACG
13
GCG
7
CCG
16
TCG
12
 
 
 
 
CCT
116
TCT
44
208
LeuAAG
11
GAG
 
CAG
6
TAG
5
 
 
 
 
CAA
14
TAA
10
46

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
6
GAA
30
 
 
 
 
36
AsnATT
 
GTT
30
 
 
 
 
30
Lys 
 
 
 
CTT
40
TTT
78
118
AspATC
6
GTC
42
 
 
 
 
48
Glu 
 
 
 
CTC
164
TTC
435
599
HisATG
4
GTG
19
 
 
 
 
23
Gln 
 
 
 
CTG
40
TTG
20
60

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
18
GAT
 
 
 
TAT
8
26
Met 
 
 
 
CAT
35
 
 
35
TyrATA
11
GTA
39
 
 
 
 
50
Supres 
 
 
 
CTA
13
TTA
4
17
CysACA
143
GCA
338
 
 
 
 
481
Trp 
 
 
 
CCA
178
 
 
178
SelCys 
 
 
 
 
 
TCA
29
29

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.