GtRNAdb

tRNAscan-SE Analysis of Burkholderia pseudomallei 668

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCAGCGGTTCGATCCCGCTTACCTCCACCA chrI.trna34-AlaGGC Sc: 86.46 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCGGTAGCTCAGCTGGGAGAGCGTCGCGTTCGCAATGCGAAG...........GtCGGGAGTTCGATCCTCCTCCGCTCCACCA chrI.trna18-AlaCGC Sc: 84.28 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCTGCCTCCACCA chrII.trna2-AlaTGC Sc: 90.89 GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCTGCCTCCACCA chrI.trna4-AlaTGC Sc: 90.89 GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCTGCCTCCACCA chrI.trna27-AlaTGC Sc: 90.89 GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCTGCCTCCACCA chrI.trna20-AlaTGC Sc: 90.89

Arg tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCTGTAGCTCAGTTGGAtA.GAGTACTTGGCTACGAACCAAGGG...........GtCGTGGGTTCGAATCCTGCCAGCCGCGCCA chrI.trna12-ArgACG Sc: 87.10 GCGGCTGTAGCTCAGTTGGAtA.GAGTACTTGGCTACGAACCAAGGG...........GtCGTGGGTTCGAATCCTGCCAGCCGCGCCA chrI.trna11-ArgACG Sc: 87.10 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCGTAGCTCAAT.GGAtA.GAGTACTGCCCTCCGAAGGCAGGG...........GtTGCTGGTTCGATCCCAGCCGGGCGCGCCA chrI.trna17-ArgCCG Sc: 82.41 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CTCCCCGTAGTTCAAT.GGAtA.GAACAAGCGCCTCCTAAGCGCTAG...........A.TACAGGTTCGATTCCTGTCGGGGGGACCA chrI.trna48-ArgCCT Sc: 72.32 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CCGCCCTTAGCTCAGTCGGAtA.GAGCAACGGCCTTCTAAGCCGTAG...........GtCACACGTTCGAATCGTGTAGGGCGGGCCA chrI.trna5-ArgTCT Sc: 86.86

Asn tRNAs

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... TCCCCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAG...........GtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA chrI.trna9-AsnGTT Sc: 85.87 TCCCCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAG...........GtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA chrI.trna8-AsnGTT Sc: 85.87

Asp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chrI.trna38-AspGTC Sc: 95.34 GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chrI.trna36-AspGTC Sc: 95.34 GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GgCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chrI.trna41-AspGTC Sc: 90.54

Cys tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCGCGATAGCAAAGCGGTT.ATGCAGCGGCCTGCAAAGCCGTGT...........AGGCCGGTTCGACTCCGGCTCGCGCCTCCA chrI.trna31-CysGCA Sc: 64.85 GGCGCGGTAGCAAAGCGGTT.ATGCGGCGGCCTGCAAAGCCGCTC...........AGGTCGGTTCGACTCCGGCTCGCGCCTCCA chrII.trna4-CysGCA Sc: 56.83

Gln tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGGAGTCGCCAAGTTGGTtAAGGCACCGGATTTTGATTCCGGCA...........TgCGAGGGTTCGAGTCCTTCCTCCCCTGCCA chrI.trna51-GlnTTG Sc: 75.81

Glu tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GTCCCCTTCGTCTAGAGGCctA.GGACATCACCCTTTCACGGTGAGT...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA chrI.trna37-GluTTC Sc: 60.10 GTCCCCTTCGTCTAGAGGCctA.GGACATCACCCTTTCACGGTGAGT...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA chrI.trna35-GluTTC Sc: 60.10

Gly tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAGTAGCTCAGTTGGT.A.GAGCGCAACCTTGCCAAGGTTGAG...........GtCGCGAGTTCGAGACTCGTCTCCCGCTCCA chrI.trna30-GlyGCC Sc: 89.05 GCGGGAGTAGCTCAGTTGGT.A.GAGCGCAACCTTGCCAAGGTTGAG...........GtCGCGAGTTCGAGACTCGTCTCCCGCTCCA chrI.trna29-GlyGCC Sc: 89.05 >>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGCGTCGTATAAT.GGCcA.TTACCTCAGCTTCCCAAGCTGATG...........A.CGTGGGTTCGATTCCCATCGCCCGCTCCA chrI.trna14-GlyCCC Sc: 61.13 >>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTAGCTCAAT.GGT.A.GAGCAGAAGCCTTCCAAGCTTACG...........A.CGAGGGTTCGATTCCCTTCACCCGCTCCA chrI.trna22-GlyTCC Sc: 82.17

His tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGCTGTAGCTCAGTTGGTAGAGTCCAGGATTGTGATTCCTGTT...........GtCGTGGGTTCGAGTCCCATCAGCCACCCCA chrI.trna42-HisGTG Sc: 80.89

Ile tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA chrII.trna1-IleGAT Sc: 93.29 GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA chrI.trna3-IleGAT Sc: 93.29 GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA chrI.trna26-IleGAT Sc: 93.29 GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA chrI.trna19-IleGAT Sc: 93.29

Leu tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGACGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGTGGC.GAAA....GCCGTGCGAGTTCGAGTCTCGC.CGTCGGCACCA chrII.trna7-LeuGAG Sc: 65.46 GCCGACGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGTGGC.GAAA....GCTGTGCGAGTTCGAGTCTCGC.CGTCGGCACCA chrI.trna2-LeuGAG Sc: 63.68 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCAGGTGGCGGAATTGGTaGACGCACTAGGTTCAGGTCCTAGCGGTGGCAA...CACCGTGGAGGTTCGAGTCCTCT.CCTGGGCACCA chrI.trna45-LeuCAG Sc: 76.78 GCCCAGGTGGCGAAATTGGTaGACGCACTAGGTTCAGGTCCTAGCGGTGGCAA...CACCGTGGAGGTTCGAGTCCTCT.CTTGGGCACCA chrI.trna44-LeuCAG Sc: 70.94 >>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<.... GCGTGAGTGGCGAAATTGGTaGACGCACCAGGTTTAGGTCCTGACGCCCGCAA...GGGCGTGCCGGTTCGAGTCCGGC.CTCACGCACCA chrI.trna39-LeuTAG Sc: 77.10 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCAGGTGGTGAAATTGGTaGACGCAGGGGACTCAAAATCCCCCGCC.GCAA....GGCGTGCCGGTTCGATTCCGGC.CCTGGGCACCA chrI.trna49-LeuCAA Sc: 75.09

Lys tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCGTTAGCTCAGTTGGTAGAGCAGCGGACTCTTAATCCGTAG...........GtCGAGTGTTCGAGTCACTCACGCCCCACCA chrI.trna52-LysCTT Sc: 94.68 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCGTTAGCTCAGCTGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCACTGGTTCGAATCCAGTACGGCCTACCA chrI.trna15-LysTTT Sc: 92.38

Met tRNAs

>>>>>>>..>>>>...........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGCGAATTAGCTCAGTC.GGTtA.GAGCGACGGAATCATAATCCGCAG...........GtCCGGGGTTCGAGTCCCTGATTCGCCACCA chrI.trna50-MetCAT Sc: 88.36 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTGTAGCTCAGG..GGTtA.GAGCAGTCGACTCATAATCGATTG...........GtCGCGGGTTCGAAACCCGCCGGGCCCACCA chrII.trna6-MetCAT Sc: 86.24 .>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGTCtGGC.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTACCCCCGCAACCA chrI.trna43-MetCAT Sc: 86.01 CGCGGGGTGGAGCAGTCtGGC.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTACCCCCGCAACCA chrI.trna32-MetCAT Sc: 86.01

Phe tRNAs

>>>>.>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<.<<<<.... GGCCCGGTAGCTCAGTTGGTAGAGCAGCGGATTGAAAATCCGCGT...........GtCGGTGGTTCGATTCCGCCCCAGGCCACCA chrI.trna1-PheGAA Sc: 87.37

Pro tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTAGCGCAGCCtGGTAGCGTACCTGCATGGGGTGCAGGTG...........GtCGGAGGTTCAAATCCTCTCGCCCCGACCA chrI.trna46-ProGGG Sc: 81.38 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGTGTAGCTTAGCCtGGTAGAGCGCTACGTTCGGGACGTAGAG...........GcCGGAGGTTCGAATCCTCTCACCCCGACCA chrI.trna16-ProCGG Sc: 81.43 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGAGCGTAGCGCAGCCtGGTAGCGCATCTGATTTGGGATCAGAGG...........GtCGTAGGTTCGAATCCTATCGCTCCGACCA chrI.trna47-ProTGG Sc: 88.66

SeC tRNAs

Ser tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGAGATGGATGAGTGGTttA.AGTCGCACGCCTGGAAAGCGTGT.ATAGGTGAAA..GCCTAT..CGGGGGTTCGAATCCCCC..TCTCTCCGCCA chrII.trna3-SerGGA Sc: 75.69 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAAAGGTGGCAGAGAGGTcgA.ATGCGCCGGACTCGAAATCCGGT.ATACGGTTATa.CCGTAT..CGTGGGTTCGAATCCCAC..CCTTTCCGCCA chrI.trna28-SerCGA Sc: 69.83 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>........<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAAGCGTGGCCGAGTGGTttA.AGGCACTGGTCTTGAAAACCAGC.GACGG.GCAA...CCGTC..CGTGAGTTCGAATCTCAC..CGCTTCCGCCA chrI.trna13-SerTGA Sc: 78.34 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>.>>........<<.<<...>>>>>.......<<<<<..<<<<<<<.... GGAGACGTGGCCGAGAGGTcgA.AGGCACTCCCCTGCTAAGGGAGCATCTGGGCCAAa.ACCTGGAtCGAGGGTTCGAATCCCTC..CGTCTCCGCCA chrI.trna33-SerGCT Sc: 69.97

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCATGTGGCTCAGT.GGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCGGCAGTTCGATCCTGCCCATGGGCACCA chrI.trna23-ThrGGT Sc: 90.12 >>>>>.>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<.<<<<<.... GCCGGTGTAGCTCAGTTGGTA.GAGCAGCGCATTCGTAATGCGAAG...........GtCGGAAGTTCGAGTCTTCTCTCCGGCACCA chrI.trna10-ThrCGT Sc: 88.22 >>>>>>>..>>>>.........<<<<.>.>>>.......<<<.<................>>>>>.......<<<<<<<<<<<<.... GCCGGCTTAGCTCATCTGGTA.GAGCAGTTGATTTGTAATCATCAG...........GtGGCGGGTTCGAGTCCTGCAGCCGGCACCA chrI.trna25-ThrTGT Sc: 81.30

Trp tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGGTATAGCTCAACTGGCAGAGCGTCGGTCTCCAAAACCGAAG...........GtTGGGGGTTCGATTCCCTCTGCCCCTGCCA chrI.trna24-TrpCCA Sc: 84.85

Tyr tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGGGGTGCCCGAGTGGCtaA.AGGGGGCAGACTGTAAATCTGTTGGCTTAC....GCCTaCGTTGGTTCGAATCCAAC.CTCCTCCACCA chrI.trna21-TyrGTA Sc: 66.50

Val tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGCTCGTAGCTCAGTTGGTtA.GAGCACCACCTTGACATGGTGGGG...........GtCGTTGGTTCGAATCCAATCGAGCCTACCA chrII.trna5-ValGAC Sc: 91.08 AGGCTCGTAGCTCAGTTGGTtA.GAGCACCACCTTGACATGGTGGGG...........GtCGTTGGTTCGAATCCAATCGAGCCTACCA chrI.trna6-ValGAC Sc: 91.08 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGGTTAGCTCAGC.GGT.A.GAGCACTGCCTTCACACGGCAGGG...........GtCACTGGTTCGATCCCAGTACCGCCCACCA chrI.trna7-ValCAC Sc: 91.15 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTGCTTAGCTCAGTTGGT.A.GAGCGGCGCCCTTACAAGGCGTAG...........GtCGGGAGTTCGAGCCTCTCAGCACCCACCA chrI.trna40-ValTAC Sc: 93.03

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.