GtRNAdb

tRNAscan-SE Analysis of Burkholderia pseudomallei 668

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chrI 1 152929 153004 Phe GAA ttttcttcgt gcagtatccc0 0 87.37 72.8214.55 Both
chrI 2 1260303 1260387 Leu GAG tgcatgcagt aagttactca0 0 63.68 32.3431.34 Both
chrI 3 1297151 1297227 Ile GAT acagactcag attgtctggc0 0 93.29 71.1722.12 Both
chrI 4 1297262 1297337 Ala TGC gtctctgtat attgcgatga0 0 90.89 78.3412.55 Both
chrI 5 1476780 1476856 Arg TCT ttctttgcga gaattccatg0 0 86.86 56.3730.49 Both
chrI 6 1685116 1685192 Val GAC cagcttcttc acgacattcg0 0 91.08 63.9527.13 Both
chrI 7 2629298 2629372 Val CAC aaggctcttt aagaattcgc0 0 91.15 67.8623.29 Both
chrI 8 2780465 2780540 Asn GTT tgctgtttgt agaattgcaa0 0 85.87 63.0522.82 Both
chrI 9 2780630 2780705 Asn GTT actgttttat gcttcgaagg0 0 85.87 63.0522.82 Both
chrI 10 2887205 2887280 Thr CGT tttctctgtt acggattcaa0 0 88.22 73.4814.74 Both
chrI 11 2900832 2900908 Arg ACG acttctgcgt ctttttcgag0 0 87.10 72.0615.04 Both
chrI 12 2900968 2901044 Arg ACG cgctttgcgt tttatgaagg0 0 87.10 72.0615.04 Both
chrI 13 2908425 2908512 Ser TGA gctcgacctt tgacacgctt0 0 78.34 41.3437.00 Both
chrI 14 3000645 3000719 Gly CCC tgcgcgttct cttccccggc0 0 61.13 32.9928.14 Eufind
chrI 15 3138934 3139009 Lys TTT cgcctctttt aagacatgaa0 0 92.38 75.1517.23 Both
chrI 16 3414437 3414513 Pro CGG gagttcaaat ggtttccctt0 0 81.43 57.9323.50 Both
chrI 17 3814265 3814190 Arg CCG gtatccgtaa agtctttgtt0 0 82.41 60.0122.40 Both
chrI 18 3722177 3722102 Ala CGC ctgttggtga agaataatcg0 0 84.28 68.3315.95 Both
chrI 19 3683749 3683673 Ile GAT acagactcag attgtctggc0 0 93.29 71.1722.12 Both
chrI 20 3683638 3683563 Ala TGC gtctctgtat attgcgatga0 0 90.89 78.3412.55 Both
chrI 21 3679224 3679139 Tyr GTA agttctctac agacataagc0 0 66.50 39.1027.40 Both
chrI 22 3679095 3679022 Gly TCC gctggccctt gtccaggcag0 0 82.17 64.7217.45 Both
chrI 23 3678997 3678923 Thr GGT agcataaagc gcaggtagtc0 0 90.12 63.7226.40 Both
chrI 24 3677610 3677535 Trp CCA aacatggtct cataagccac0 0 84.85 64.7920.06 Both
chrI 25 3574046 3573971 Thr TGT ccggctcaac gacactaagc0 0 81.30 65.6515.65 Both
chrI 26 3476366 3476290 Ile GAT acagactcag attgtctggc0 0 93.29 71.1722.12 Both
chrI 27 3476255 3476180 Ala TGC gtctctgtat attgcgatga0 0 90.89 78.3412.55 Both
chrI 28 2930601 2930511 Ser CGA gagcgaaaaa gataaaacaa0 0 69.83 37.9831.85 Both
chrI 29 2733522 2733447 Gly GCC gaaacaaaac gtttggaagc0 0 89.05 65.6123.44 Both
chrI 30 2733387 2733312 Gly GCC gcaggatgat gaacaagggg0 0 89.05 65.6123.44 Both
chrI 31 2733197 2733124 Cys GCA gtccgcttac agttagaaga0 0 64.85 40.7124.14 Both
chrI 32 2593639 2593563 Met CAT atttctctga aattcggcga0 0 86.01 58.6827.33 Both
chrI 33 2511295 2511202 Ser GCT cgaaggtttg gaaatggcgg0 0 69.97 43.6926.28 Both
chrI 34 2447940 2447865 Ala GGC aacgagacac gttgaacgca0 0 86.46 68.1818.28 Both
chrI 35 2447714 2447639 Glu TTC aaaagatttt gacatcgcgg0 0 60.10 29.8030.30 Both
chrI 36 2447561 2447485 Asp GTC tgcaggaagt gatcgaaagc0 0 95.34 76.8618.48 Both
chrI 37 2447420 2447345 Glu TTC gcagtgcgtt gaacagggcg0 0 60.10 29.8030.30 Both
chrI 38 2447263 2447187 Asp GTC cagcaagact aatcgaagcc0 0 95.34 76.8618.48 Both
chrI 39 2321899 2321813 Leu TAG tttttcgcgt acagcatctt0 0 77.10 51.4925.61 Both
chrI 40 2299192 2299117 Val TAC aatccggagc tttccgtttc0 0 93.03 70.1122.92 Both
chrI 41 2295600 2295524 Asp GTC gcaagaccaa tcatcccgaa0 0 90.54 72.0518.49 Both
chrI 42 1794441 1794366 His GTG aaaaatagtg gagtttcaag0 0 80.89 58.5822.31 Both
chrI 43 1786078 1786002 Met CAT tttcgacgga agccagtttt0 0 86.01 58.6827.33 Both
chrI 44 1772301 1772215 Leu CAG gcacacacct gattcaaaag0 0 70.94 44.2426.70 Both
chrI 45 1772057 1771971 Leu CAG atgcagcagt tcaagctgta0 0 76.78 44.1332.65 Both
chrI 46 1697754 1697678 Pro GGG ttcacgcttt ggaatcaagg0 0 81.38 60.9520.43 Both
chrI 47 1466575 1466499 Pro TGG gccgactcct aaattcccgc0 0 88.66 63.1725.49 Both
chrI 48 1104955 1104881 Arg CCT aaactatccg gtcatgctcc0 0 72.32 45.5426.78 Both
chrI 49 979220 979136 Leu CAA gcgcaggttg gcagacatcg0 0 75.09 47.3427.75 Both
chrI 50 786276 786200 Met CAT gccttctgtt acaaattcaa0 0 88.36 69.6218.74 Both
chrI 51 540639 540563 Gln TTG agttaagtgt aaatttcttt0 0 75.81 54.6521.16 Both
chrI 52 135067 134992 Lys CTT tgcttctgtt aagaaatcaa0 0 94.68 68.6526.03 Both
 
chrII 1 559973 560049 Ile GAT acagactcag attgtctggc0 0 93.29 71.1722.12 Both
chrII 2 560084 560159 Ala TGC gtctctgtat attgcgatga0 0 90.89 78.3412.55 Both
chrII 3 591973 592062 Ser GGA ccgtcttccc gaacttggcg0 0 75.69 47.0528.64 Both
chrII 4 1371358 1371431 Cys GCA gtcaactcac ggattattcc0 0 56.83 35.7721.06 Both
chrII 5 2760092 2760016 Val GAC cgcctcacac acgcacatcg0 0 91.08 63.9527.13 Both
chrII 6 2436604 2436529 Met CAT ttcgttttta tatttttcta0 0 86.24 69.8216.42 Both
chrII 7 1094024 1093940 Leu GAG gcatgggaat aggtatttcg0 0 65.46 32.8332.63 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.