GtRNAdb

tRNAscan-SE Analysis of Caldicellulosiruptor saccharolyticus DSM 8903

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 285859 285934 Ala TGC ttattgaggt ggtagatatg0 0 97.84 78.8618.98 Both
chr 2 285944 286020 Ile GAT aggtagatat gggaagaaga0 0 94.29 68.4825.81 Both
chr 3 517256 517343 Leu CAA tataaagtgt aaagtgctcg0 0 72.53 50.8721.66 Both
chr 4 605388 605464 Pro TGG atgctgatgg ttagaataga0 0 86.25 66.2520.00 Both
chr 5 605560 605644 Tyr GTA agtaaaaaat ctaagattaa0 0 76.03 45.6930.34 Both
chr 6 605662 605737 Thr TGT taaaaatggt tttaatttaa0 0 87.14 70.4116.73 Both
chr 7 605764 605839 Lys CTT aataaaaggt atttaaatgc0 0 95.64 70.0925.55 Both
chr 8 605848 605924 Arg TCT caatttaaat tttgtttttg0 0 90.40 72.2518.15 Both
chr 9 861334 861425 Ser GCT tgagccatgc gtagagaata0 0 77.25 42.8534.40 Both
chr 10 1020428 1020503 Val TAC caataaatat tctaaaatgg0 0 96.51 81.1315.38 Both
chr 11 1020512 1020588 Asp GTC catctaaaat gtttaagaca0 0 94.23 76.3417.89 Both
chr 12 1020600 1020675 Phe GAA tttaagacat aagaaaatat0 0 90.94 69.3421.60 Both
chr 13 1020694 1020769 Gly GCC attataatga aaattttata0 0 91.60 70.5121.09 Both
chr 14 1020792 1020866 Cys GCA gtaagaatgt atatatgaaa0 0 75.30 45.1430.16 Both
chr 15 1400474 1400550 His GTG aaaagaggcg tatataaaat0 0 89.65 64.5825.07 Both
chr 16 1400565 1400640 Gln TTG taaaataagt tttttatttt0 0 70.79 44.4526.34 Both
chr 17 1405841 1405916 Lys TTT ccttaaatac ttgttaaata0 0 85.02 56.8028.22 Both
chr 18 1813559 1813632 Gly TCC gcaaataaga gataaagaaa0 0 88.11 67.7920.32 Both
chr 19 2241920 2241994 Thr CGT tattgtactt agaaaattaa0 0 91.34 65.6325.71 Both
chr 20 2884397 2884484 Leu GAG tgagtgaggt attaaaaaag0 0 60.61 28.8231.79 Both
chr 21 2884554 2884630 Arg ACG aagcagatgc gttgttttca0 0 85.25 66.3418.91 Both
chr 22 2938708 2938783 Trp CCA agataagtgt taagttctct0 0 80.49 60.0420.45 Both
chr 23 2876718 2876644 Asn GTT aataagaggt attttttaag0 0 85.92 62.1223.80 Both
chr 24 2876634 2876559 Met CAT aattttttaa atttcaaaaa0 0 90.70 69.6321.07 Both
chr 25 2742748 2742673 Lys TTT attgttgtgt ttttaattta0 0 85.02 56.8028.22 Both
chr 26 2742649 2742575 Glu TTC gctcacaggt ttgtttatag0 0 78.95 54.5624.39 Both
chr 27 2390246 2390173 Gln CTG ttttgattac aaatggccct0 0 67.06 33.6333.43 Both
chr 28 2390168 2390093 Glu CTC cagccaaaat tttatattca0 0 66.66 43.1823.48 Both
chr 29 2378529 2378454 Ala TGC atttgtgggt agagatgggc0 0 97.84 78.8618.98 Both
chr 30 2378447 2378371 Ile GAT accaagagat gggaagaaga0 0 94.29 68.4825.81 Both
chr 31 2353899 2353809 Ser TGA gaaaataagc ttaattttat0 0 76.00 37.4838.52 Both
chr 32 2350859 2350786 Gly CCC taattgcagt gatttaaaaa0 0 86.50 66.1820.32 Both
chr 33 2350736 2350660 Thr GGT ttttgtaaat agtttaaagg0 0 87.20 67.8319.37 Both
chr 34 2324377 2324293 Leu TAG gcaaagaaaa aaaaataaat0 0 77.00 56.5620.44 Both
chr 35 2324236 2324147 Leu TAA taattgcgat gatatcgcgg0 0 74.71 50.3724.34 Both
chr 36 2324141 2324066 Met CAT caccagatat aatataaata0 0 91.01 64.4726.54 Both
chr 37 2324045 2323969 Met CAT taatgggaat ttttatgtta0 0 92.07 69.2122.86 Both
chr 38 2323939 2323865 Glu TTC ttaaagatat aaacagaaaa0 0 78.95 54.5624.39 Both
chr 39 2318743 2318657 Leu CAG ataagctttt aatgagaaaa0 0 72.00 43.4628.54 Both
chr 40 1912776 1912700 Val GAC attcagtggt ttttattttt0 0 99.28 78.1821.10 Both
chr 41 1891325 1891247 Pro GGG taataaaggt tttatttttg0 0 86.76 64.4422.32 Both
chr 42 1617941 1617865 Arg CCT ccaaatagat ttttggttta0 0 83.91 61.1922.72 Both
chr 43 1389269 1389177 Ser CGA aaaaagaggc tttttatttt0 0 76.17 43.1633.01 Both
chr 44 1143797 1143722 Arg TCG atatgaagat gagatagcaa0 0 83.33 67.4215.91 Both
chr 45 1013667 1013590 Pro CGG aacaaaaggt ttttaatagc0 0 93.10 72.6620.44 Both
chr 46 330824 330732 Ser GGA acaaagaggc tttttatttt0 0 74.60 42.0832.52 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.