GtRNAdb

tRNAscan-SE Analysis of Caulobacter crescentus

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 76150 76225 Thr CGT gagcccgtgg ctttttacat0 0 87.10 58.1528.95 Both
chr 2 556002 556078 Arg ACG aaggcagtgc ttcttcccaa0 0 85.54 58.8926.65 Both
chr 3 816274 816348 Val GAC tcgcttcggc ttcccttcct0 0 85.42 61.7223.70 Both
chr 4 1031170 1031243 Gln TTG ccgttcctgc cttctcctca0 0 58.25 26.4731.78 Both
chr 5 1115924 1116013 Ser GGA cgagtgcgct ctactctcag0 0 74.61 46.4628.15 Both
chr 6 1187706 1187780 Gly GCC cctcgccgat ttctcccggt0 0 91.12 68.7622.36 Both
chr 7 1187831 1187905 Gly GCC gcgaatatgc ttctcggttt0 0 91.12 68.7622.36 Both
chr 8 1397190 1397273 Tyr GTA gcgtgcttgg tgcgcgcgat0 0 53.83 34.4719.36 Eufind
chr 9 1397384 1397457 Gly TCC gggtgattgg gctccctgaa0 0 78.75 57.3721.38 Both
chr 10 1465800 1465874 Asn GTT agcgacctgt ctctcacctt0 0 92.60 66.2726.33 Both
chr 11 1466010 1466084 Asn GTT agcgacctgt ctcgcccgaa0 0 92.60 66.2726.33 Both
chr 12 1523391 1523467 Pro GGG ccttccgcgt tttccttcgg0 0 83.53 59.3624.17 Both
chr 13 1538900 1538974 Glu TTC gcggggccgt cccgcgaggc0 0 57.79 33.0824.71 Eufind
chr 14 1539020 1539094 Glu TTC gcggcgatgt tcttcggctg0 0 57.79 33.0824.71 Eufind
chr 15 1540445 1540521 Pro TGG gctgatgttt tcggtaaggc0 0 84.27 62.9021.37 Both
chr 16 1540882 1540958 Arg TCT cggcgagcgc aaactatgcc0 0 91.41 69.2122.20 Both
chr 17 1756063 1756137 Lys TTT gatcgtgagc actccccgaa0 0 93.63 69.4924.14 Both
chr 18 2018493 2018582 Ser TGA cgcctgctcc gaattccaag0 0 78.98 45.5333.45 Both
chr 19 2151696 2151772 Asp GTC gaaggggtat ccctttcaga0 0 96.44 81.6614.78 Both
chr 20 2151837 2151913 Asp GTC ggcgcacgac ccgtccatat0 0 96.44 81.6614.78 Both
chr 21 2430972 2431046 Gly CCC gctcccctga aggcttttcc0 0 87.58 65.8521.73 Both
chr 22 2509083 2509157 Val CAC tccacacggc ttctcctctt0 0 86.65 63.7222.93 Both
chr 23 2551641 2551715 Thr GGT cctcctcgtc tggggaccca0 0 85.05 66.4618.59 Both
chr 24 2582010 2582083 Cys GCA acacccggat tcattgttgc0 0 76.46 55.4920.97 Both
chr 25 2893438 2893522 Leu TAA tcacctgcac gccaacccac0 0 74.42 52.1022.32 Both
chr 26 3848459 3848534 Ala GGC agaaagaatt tcaaggcccg0 0 89.04 70.5618.48 Both
chr 27 3880543 3880468 Ala CGC gccgctcctt aggacctccc0 0 90.21 77.2712.94 Both
chr 28 3856869 3856783 Leu CAG gcgacagcgg ccctttgttt0 0 79.22 48.8930.33 Both
chr 29 3770012 3769936 Ile GAT aggccgtcat ctctttcctc0 0 92.03 64.8027.23 Both
chr 30 3769868 3769793 Ala TGC gtacaagaga tttttggttc0 0 95.36 82.8612.50 Both
chr 31 3766425 3766349 Met CAT aacaccctga gtggactgat0 0 81.53 54.0927.44 Both
chr 32 3461519 3461444 Trp CCA gtcggtccgc ctatatgttt0 0 87.30 62.8324.47 Both
chr 33 3417958 3417882 Met CAT tcctggctat ggacggacag0 0 82.05 69.7012.35 Both
chr 34 2839981 2839905 Ile GAT aggccgtcat ctctttcctc0 0 92.03 64.8027.23 Both
chr 35 2839837 2839762 Ala TGC gtacaagaga tttttggttc0 0 95.36 82.8612.50 Both
chr 36 2836394 2836318 Met CAT aacaccctga gtggactaag0 0 81.53 54.0927.44 Both
chr 37 2630527 2630437 Ser GCT cctctcagga ttcctccctt0 0 68.28 41.0327.25 Both
chr 38 2542752 2542677 Phe GAA aagcccggat tcttcccttc0 0 92.55 72.9119.64 Both
chr 39 2537440 2537364 His GTG ctcgcgatga tcgcaagtcc0 0 85.87 62.8123.06 Both
chr 40 2495562 2495487 Met CAT aactccgcgc aatcttcagt0 0 81.76 61.9919.77 Both
chr 41 2395908 2395824 Leu CAA gcgaagacat actccttttt0 0 72.11 48.6123.50 Both
chr 42 2383007 2382923 Leu GAG ctcaccacga aggtgaacaa0 0 70.40 35.2535.15 Both
chr 43 2162672 2162588 Leu TAG ccgggcgcac tacctctcgt0 0 76.79 52.1224.67 Both
chr 44 2154567 2154493 Val TAC ccacccaaca ttctccctat0 0 90.05 68.1521.90 Both
chr 45 1374032 1373958 Thr TGT actggcccaa tttcccttgt0 0 85.16 62.4922.67 Both
chr 46 1265691 1265616 Lys CTT atcgtcgaat ttctcctctt0 0 97.50 71.7625.74 Both
chr 47 1068550 1068474 Met CAT ctcctggtct ggaccgacat0 0 82.05 69.7012.35 Both
chr 48 1031005 1030929 Pro CGG gcctccaagt tttcctcccc0 0 87.55 61.3226.23 Both
chr 49 694411 694335 Arg CCT cgcgccgcgc ggggctgtaa0 0 86.31 67.3218.99 Both
chr 50 473144 473055 Ser CGA aacggcgcct atcccctgcg0 0 74.74 38.3336.41 Both
chr 51 200201 200125 Arg CCG aaggtcgcag gcttcactca0 0 86.37 55.7630.61 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.