GtRNAdb

tRNAscan-SE Analysis of Caenorhabditis brenneri (WUGSC 6.0.1 Feb 2008)

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>> Genome Seq
tRNA Gene Summary




tRNAs Decoding Standard 20 AA1073
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)1
tRNAs with undetermined
or unknown isotypes
23
Predicted pseudogenes0
Total tRNAs1097


Intron Summary

tRNAs with introns
49
Leu
CAA
14
Phe
GAA
1
Ile
GAT
1
Ile
TAT
6
Tyr
ATA
2
Tyr
GTA
25


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
34
GGC
 
CGC
7
TGC
11
52
GlyACC
 
GCC
38
CCC
25
TCC
69
132
ProAGG
11
GGG
4
CGG
9
TGG
53
77
ThrAGT
32
GGT
2
CGT
9
TGT
16
59
ValAAC
33
GAC
 
CAC
15
TAC
8
56

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
19
GGA
 
CGA
8
TGA
12
ACT
 
GCT
14
 
 
 
 
53
ArgACG
33
GCG
 
CCG
26
TCG
17
 
 
 
 
CCT
12
TCT
13
101
LeuAAG
32
GAG
 
CAG
9
TAG
9
 
 
 
 
CAA
14
TAA
7
71

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
23
 
 
 
 
23
AsnATT
 
GTT
31
 
 
 
 
31
Lys 
 
 
 
CTT
50
TTT
27
77
AspATC
 
GTC
33
 
 
 
 
33
Glu 
 
 
 
CTC
37
TTC
36
73
HisATG
 
GTG
24
 
 
 
 
24
Gln 
 
 
 
CTG
11
TTG
36
47

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
34
GAT
1
 
 
TAT
26
61
Met 
 
 
 
CAT
29
 
 
29
TyrATA
2
GTA
27
 
 
 
 
29
Supres 
 
 
 
CTA
1
TTA
 
1
CysACA
3
GCA
20
 
 
 
 
23
Trp 
 
 
 
CCA
22
 
 
22
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.