GtRNAdb

tRNAscan-SE Analysis of Caenorhabditis briggsae (cb3 Jan 2007)

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> Genome DB
>> Genome Seq
tRNA Gene Summary





tRNAs Decoding Standard 20 AA772
Selenocysteine tRNAs (TCA)2
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
3
Predicted pseudogenes181
Total tRNAs958


Intron Summary

tRNAs with introns
41
Gly
GCC
1
Leu
TAG
1
Leu
CAA
10
Phe
GAA
1
Asn
ATT
1
Ile
TAT
5
Tyr
GTA
22


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
30
GGC
 
CGC
7
TGC
14
51
GlyACC
 
GCC
20
CCC
6
TCC
47
73
ProAGG
6
GGG
1
CGG
4
TGG
40
51
ThrAGT
22
GGT
 
CGT
9
TGT
11
42
ValAAC
26
GAC
 
CAC
6
TAC
6
38

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
16
GGA
 
CGA
8
TGA
10
ACT
 
GCT
9
 
 
 
 
43
ArgACG
23
GCG
 
CCG
2
TCG
11
 
 
 
 
CCT
2
TCT
10
48
LeuAAG
27
GAG
 
CAG
7
TAG
6
 
 
 
 
CAA
11
TAA
6
57

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
22
 
 
 
 
22
AsnATT
 
GTT
25
 
 
 
 
25
Lys 
 
 
 
CTT
42
TTT
16
58
AspATC
 
GTC
36
 
 
 
 
36
Glu 
 
 
 
CTC
31
TTC
19
50
HisATG
 
GTG
21
 
 
 
 
21
Gln 
 
 
 
CTG
10
TTG
25
35

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
21
GAT
 
 
 
TAT
24
45
Met 
 
 
 
CAT
24
 
 
24
TyrATA
 
GTA
22
 
 
 
 
22
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
17
 
 
 
 
17
Trp 
 
 
 
CCA
14
 
 
14
SelCys 
 
 
 
 
 
TCA
2
2

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.