GtRNAdb

tRNAscan-SE Analysis of Caenorhabditis elegans (WS190 May 2008)

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>> Genome Seq
tRNA Gene Summary




tRNAs Decoding Standard 20 AA605
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
3
Predicted pseudogenes211
Total tRNAs820


Intron Summary

tRNAs with introns
31
Leu
CAA
7
Asp
ATC
1
Ile
TAT
4
Tyr
GTA
19


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
22
GGC
 
CGC
4
TGC
8
34
GlyACC
 
GCC
16
CCC
3
TCC
36
55
ProAGG
6
GGG
 
CGG
4
TGG
32
42
ThrAGT
17
GGT
 
CGT
7
TGT
10
34
ValAAC
19
GAC
 
CAC
6
TAC
5
30

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
15
GGA
 
CGA
6
TGA
9
ACT
 
GCT
9
 
 
 
 
39
ArgACG
19
GCG
1
CCG
2
TCG
10
 
 
 
 
CCT
4
TCT
8
44
LeuAAG
19
GAG
 
CAG
6
TAG
3
 
 
 
 
CAA
7
TAA
4
39

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
14
 
 
 
 
14
AsnATT
 
GTT
20
 
 
 
 
20
Lys 
 
 
 
CTT
31
TTT
15
46
AspATC
 
GTC
27
 
 
 
 
27
Glu 
 
 
 
CTC
24
TTC
17
41
HisATG
1
GTG
19
 
 
 
 
20
Gln 
 
 
 
CTG
7
TTG
20
27

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
21
GAT
 
 
 
TAT
8
29
Met 
 
 
 
CAT
20
 
 
20
TyrATA
 
GTA
19
 
 
 
 
19
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
13
 
 
 
 
13
Trp 
 
 
 
CCA
12
 
 
12
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.