GtRNAdb

tRNAscan-SE Analysis of Canis familiaris (dog) (CanFam3.1 Sept 2011)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA905
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)6
tRNAs with undetermined
or unknown isotypes
2
Predicted pseudogenes0
Total tRNAs914


Intron Summary

tRNAs with introns
68
Ala
AGC
1
Pro
TGG
1
Arg
TCG
1
Arg
CCT
1
Arg
TCT
4
Leu
CAG
1
Leu
CAA
4
Lys
CTT
33
Lys
TTT
2
Glu
CTC
2
Glu
TTC
1
Gln
CTG
1
Gln
TTG
3
Ile
TAT
5
Tyr
GTA
8


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
14
GGC
 
CGC
4
TGC
11
29
GlyACC
 
GCC
11
CCC
9
TCC
11
31
ProAGG
8
GGG
 
CGG
4
TGG
8
20
ThrAGT
8
GGT
 
CGT
5
TGT
4
17
ValAAC
6
GAC
 
CAC
8
TAC
5
19

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
10
GGA
 
CGA
8
TGA
5
ACT
 
GCT
8
 
 
 
 
31
ArgACG
6
GCG
 
CCG
4
TCG
15
 
 
 
 
CCT
29
TCT
9
63
LeuAAG
4
GAG
 
CAG
7
TAG
4
 
 
 
 
CAA
5
TAA
4
24

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
10
 
 
 
 
10
AsnATT
1
GTT
21
 
 
 
 
22
Lys 
 
 
 
CTT
408
TTT
34
442
AspATC
2
GTC
13
 
 
 
 
15
Glu 
 
 
 
CTC
22
TTC
15
37
HisATG
 
GTG
9
 
 
 
 
9
Gln 
 
 
 
CTG
20
TTG
43
63

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
9
GAT
 
 
 
TAT
5
14
Met 
 
 
 
CAT
23
 
 
23
TyrATA
 
GTA
9
 
 
 
 
9
Supres 
 
 
 
CTA
3
TTA
3
6
CysACA
 
GCA
21
 
 
 
 
21
Trp 
 
 
 
CCA
6
 
 
6
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.