GtRNAdb

tRNAscan-SE Analysis of Cricetulus griseus cell line CHO-K1 (Chinese hamster ovary CriGri 1.0 Aug 2011)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA496
Selenocysteine tRNAs (TCA)2
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs498


Intron Summary

tRNAs with introns
23
Arg
TCT
4
Leu
CAA
4
Ile
TAT
4
Tyr
GTA
11


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
22
GGC
1
CGC
6
TGC
15
44
GlyACC
1
GCC
14
CCC
7
TCC
6
28
ProAGG
7
GGG
 
CGG
3
TGG
6
16
ThrAGT
8
GGT
1
CGT
4
TGT
4
17
ValAAC
13
GAC
 
CAC
9
TAC
5
27

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
6
GGA
 
CGA
3
TGA
3
ACT
 
GCT
9
 
 
 
 
21
ArgACG
6
GCG
 
CCG
3
TCG
6
 
 
 
 
CCT
6
TCT
5
26
LeuAAG
5
GAG
 
CAG
10
TAG
4
 
 
 
 
CAA
4
TAA
4
27

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
8
 
 
 
 
8
AsnATT
 
GTT
17
 
 
 
 
17
Lys 
 
 
 
CTT
86
TTT
15
101
AspATC
 
GTC
15
 
 
 
 
15
Glu 
 
 
 
CTC
20
TTC
7
27
HisATG
 
GTG
14
 
 
 
 
14
Gln 
 
 
 
CTG
11
TTG
5
16

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
13
GAT
 
 
 
TAT
5
18
Met 
 
 
 
CAT
16
 
 
16
TyrATA
 
GTA
11
 
 
 
 
11
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
41
 
 
 
 
41
Trp 
 
 
 
CCA
6
 
 
6
SelCys 
 
 
 
 
 
TCA
2
2

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.