GtRNAdb

tRNAscan-SE Analysis of Chlamydia muridarum

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGTATTAGCTCAGTTGGTAGAGCGCAACAATGGCATTGTTGAG...........GtCAGCGGTTCGATCCCGCTATGCTCCA... chr.trna37-AlaGGC Sc: 74.81 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGACTTAGCTTAGTTGGTAGAGCGTCTGATTTGCATTCAGAAG...........GtCAGGAGTTCGAATCTCCTAGTCTCCA... chr.trna26-AlaTGC Sc: 82.13

Arg tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCACCAGTAGCTCAGT.GGAtA.GAGTACCTGGCTACGAACCAGGTG...........GtCAGAGGTTCAAATCCTCTCTGGTGCG... chr.trna14-ArgACG Sc: 76.99 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCACCGATAGCTCAACTGGAtA.GAGTACCTGGCTTCGGACCAGGTG...........GtTGGAGGTTCGAACCCTCTTCGGTGCG... chr.trna11-ArgTCG Sc: 75.01 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGACCGATAGCTCAGT.GGAtA.GAGCATCCGCCTTCTAAGCGGATG...........GtCGCAGGTTCGAATCCTGCTCGGTCCG... chr.trna1-ArgTCT Sc: 87.30

Asn tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... TCCGGAGTAGCTCAGCGGTA.GAGCAGTGGACTGTTAATCCATTG...........GtCGTTGGTTCGAACCCATCCTCCGGAG... chr.trna29-AsnGTT Sc: 75.21

Asp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAGTAGTTCAATTGGTtAGAGCACCGCCCTGTCAAGGCGGAA...........GtTGCGGGTTCGAGCCCCGTCTCTCGCG... chr.trna23-AspGTC Sc: 77.52

Cys tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<.... GGTGGCATCGCCAAGCGGTA.AGGCCGAGGCCTGCAAAGCCTCT...........AtCCCCGGTTCGATTCCGGG.TGCCACCT... chr.trna31-CysGCA Sc: 61.76

Gln tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGTGTGGCCAAGCGGTA.AGGCAGCGGTTTTTGGTACCGCGC...........AtCGGAGGTTCGAATCCTTCCACCCCAG... chr.trna3-GlnTTG Sc: 63.88

Glu tRNAs

>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCCCCATCGTCTAGCCtGGCccAGGACATCGGATTTTCATTCCGGTA...........ACAGGGGTTCGAATCCCCTTGGGGTCA... chr.trna35-GluTTC Sc: 50.11

Gly tRNAs

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTAGCTCAGTGGTA.GAGCGCCACGTTGCCAACGTGAAG...........GtCGTGAGTTCAAGCCTCATCACCCGCT... chr.trna33-GlyGCC Sc: 75.06 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCGTAGCTCAATGGTA.GAGCTGTAGCCTTCCAAGCTACCG...........G.TGTCAGTTCGATTCTGATCGGGCGCT... chr.trna34-GlyTCC Sc: 69.63

His tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGAACGTAGCTCAGTTGGTtAGAGCGTCGGATTGTGGTTCCGAAG...........GtCGCGGGTTCGAACCCCGTCGTTCGCC... chr.trna32-HisGTG Sc: 81.22

Ile tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGTTATAGCTCAGTTGGTtAGAGCGCGACACTGATAATGTCGAG...........GtCCCAAGTTCAAGTCTTGGTAACCGCA... chr.trna27-IleGAT Sc: 83.91

Leu tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGAAGTGGCGGAATTGGTaT.ACGCGCTATCTTGAGGTGGTAGTGGAGC...........TTTCCtTAGGGGTTCGAGTCCCCT.CTTTCGCA... chr.trna17-LeuGAG Sc: 51.25 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<.... GCAGCTATGGCGGAACCGGTaG.ACGCGCTAGATTCAGGTTCTAGTGAGC..TTTT.......GCTCaTGGAAGTTCAAGTCTTCT.TAGCTGCAACA chr.trna12-LeuCAG Sc: 56.15 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.>.........<.<<<...>>>>>.......<<<<<.<<<<<<<.... GCCCAGGTGGTGAAATTGGTaG.ACACGCTGGATTTAGGATCCAGT.GCTTT.........GCGGCA.TGTAGGTTCAAGTCCTAT.CCTGGGCA... chr.trna5-LeuTAG Sc: 61.09 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<.<<<<<<<.... GCCGGCGTGGCGGAAT.GGTaG.ACGCGGTAGACTCAAAATCTACT.CTTA.GCAG......TAAGG.TGTTGGTTCGAGTCCAAT.CGCCGGCA... chr.trna10-LeuCAA Sc: 63.24 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<.<<<<<<<.... GCTCAGATGGTGGAAT.GGTaG.ACACTAGGGACTTAAAATCCCTT.GGGC.TTTG......GCCCG.TGCAAGTTCGAGTCTTGT.TCTGAGCA... chr.trna15-LeuTAA Sc: 58.49

Lys tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... GGGTCTTTAGCTCAGCGGTtA.GAGCATCTCACTTTTAATGAGAGG...........GtCGCAGGTTCGAATCCTTCAAGACCCA... chr.trna36-LysTTT Sc: 83.84

Met tRNAs

>>>>>>>..>>>>..........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCAATAGCTCAGC.GGTtA.GAGCTGCGGACTCATAACCCGTAG...........GtCCCTGGTTCAAATCCAGGTTGCCCCA... chr.trna8-MetCAT Sc: 78.30 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGGTATAGCTCAGGTGGTtA.GAGCAGCGGAATCATAATCCGCGT...........GtCGTTGGTTCAAGTCCGACTACCGCTA... chr.trna25-MetCAT Sc: 73.61 .>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGATAGAGTAGT.GGTcA.TCTCGTTGGGCTCATAACCCAAAG...........GtCGGAGGTTCGAATCCTTCTCCCGCTA... chr.trna24-MetCAT Sc: 71.20

Phe tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCTAGATAGCTCAGCTGGTAGAGCAGAGGACTGAAGATCCTTGT...........GtCGTCGGTTCGATCCCGGCTCTGGCCA... chr.trna18-PheGAA Sc: 76.09

Pro tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CTGGATGTAGCGCAGCCtGGT.AGCGCACTTGCATGGGGTGCAAGGG...........GgCGGAGGTTCAAATCCTCTCATCCAGA... chr.trna13-ProGGG Sc: 67.00 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGAGTATAGCGCAGCCtGGTtAGCGCGGTTGCTTTGGGAGCAATAG...........GtCGGGGGTTCGAATCCCTCTACTCCGA... chr.trna28-ProTGG Sc: 78.14

SeC tRNAs

Ser tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGAGATGTCCGAGTGGCttA.AGGAGCACGCTTGGAAAGCGTGT.GTGCGT.TAAC..GCGTAC..CGAGGGTTCGAATCCCTC..TCTCTCCG... chr.trna19-SerGGA Sc: 65.29 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAAGAGTGGCAGAGTGGTcgA.ATGCATCTGATTCGAAATCAGAAGTCCC...TCAAc...GGGGAcCGGGGGTTCAAATCCCTT..CTCTTCCG... chr.trna9-SerCGA Sc: 62.46 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAAGAATGGCAGAGCGGTttA.ATGCACCTGTCTTGAAAACAGGAGACCT...GAAA....GGGTC.CGGGGGTTCGAATCCCTC..TTCTTCCG... chr.trna4-SerTGA Sc: 70.17 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAAAGATGACTGAGTGGTcgA.AAGTACGTCCCTGCTAAGGACGC.GTACCCCTTAA.AGGGTAC..CGAGGGTTCGAATCCCTC..TCTTTCCG... chr.trna16-SerGCT Sc: 59.15

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCAGGTAGCTCAGT.GGTA.GAGCACTTGCATGGTAAGCAAGTG...........GcCGTAGGTTCAATTCCTATTCTGGGCA... chr.trna20-ThrGGT Sc: 75.30 >>>>>>>..>>>>.........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<.... GCCTAAATAGCTCAGTTGGTA.GAGCAACGCATTCGTAACGCGTAG...........GtCGTCGGTTCGATCCCGGCTTTGGGCA... chr.trna2-ThrCGT Sc: 76.52 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTGGAGTAGCTCAATTGGCA.GAGCATTCGATTTGTAATCGAACG...........GtTGAGGGTTCAATTCCTTTCTCCAGCA... chr.trna6-ThrTGT Sc: 80.09

Trp tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTGTGTAGCTTAGATGGTAGAGCAGTGGCCTCCAAAGCCGCCG...........GtCGGGGGTTCGAATCCCTCCGCACTCG... chr.trna21-TrpCCA Sc: 70.24

Tyr tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GGGGGTGTCGCATAGCGGTcaA.TTGCATCGGACTGTAAATCCGACTCCTTAC....GGATaCGTTGGTTCAAATCCAGC.CACCCCCA... chr.trna7-TyrGTA Sc: 56.66

Val tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGTATTAGCTCAGTTGGTtA.GAGCGTCACGTTGACATCGTGAAG...........GtCAGCTGTTCAAGTCAGCTATATCCCA... chr.trna30-ValGAC Sc: 72.25 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGATGCGTAGCTCAGC.GGTtA.GAGCACCTGTCTTACACACAGGGG...........GtCATAGGTTCAAATCCTGTCGTGTCCA... chr.trna22-ValTAC Sc: 78.56

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.