GtRNAdb

tRNAscan-SE Analysis of Chlamydia muridarum

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>> Genome Seq
tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 37 5490 5418 Ala GGC ctcttctctc aattctttta0 0 74.81 54.3520.46 Both
chr 26 550765 550693 Ala TGC accgctctta tctcgcggtt0 0 82.13 61.3120.82 Both
 
chr 14 1035374 1035302 Arg ACG agttttctat ttttttcttc0 0 76.99 55.8421.15 Both
chr 11 896399 896472 Arg TCG gaaaatttgt tcttctaccg0 0 75.01 54.5020.51 Both
chr 1 32623 32695 Arg TCT tcttgattgt agatgcatgc0 0 87.30 66.0921.21 Both
 
chr 29 364731 364660 Asn GTT tttgaactgt tcctttttat0 0 75.21 54.6820.53 Both
 
chr 23 601626 601553 Asp GTC ccaagattgc atcttcaacc0 0 77.52 65.3212.20 Both
 
chr 31 167619 167549 Cys GCA gatatctctc tcttaaactc0 0 61.76 30.0731.69 Both
 
chr 3 216411 216482 Gln TTG actcttccgt aattgtcttt0 0 63.88 37.2926.59 Both
 
chr 35 55189 55115 Glu TTC agcccgtcct ttacaaaaaa0 0 50.11 31.2518.86 Both
 
chr 33 94367 94296 Gly GCC ttttcttctc tctctttccc0 0 75.06 55.3119.75 Both
chr 34 58425 58355 Gly TCC ctacttgagc tcccaatatg0 0 69.63 43.7225.91 Both
 
chr 32 133288 133215 His GTG ttttgccgtg cttctttatt0 0 81.22 59.9921.23 Both
 
chr 27 550688 550615 Ile GAT tctccatctc agtctagaag0 0 83.91 51.9132.00 Both
 
chr 10 893599 893681 Leu CAA aaatgattat ttaatcgcct0 0 63.24 34.2329.01 Both
chr 12 958000 958086 Leu CAG ggcacatcat ttcttttcaa0 0 56.15 25.2130.94 Both
chr 17 898609 898528 Leu GAG cttctctttt agattcttag0 0 51.25 24.3026.95 Both
chr 15 934391 934309 Leu TAA cgtttttctc tatctttttt0 0 58.49 19.2639.23 Both
chr 5 297053 297134 Leu TAG aatcatctgt tgtctttctt0 0 61.09 34.4326.66 Both
 
chr 36 55097 55025 Lys TTT aaagaaatac tttctttttt0 0 83.84 66.7917.05 Both
 
chr 24 582970 582898 Met CAT gactttctat tttttagttt0 0 71.20 43.9127.29 Both
chr 25 582881 582808 Met CAT gtttgtttga tctcctcatc0 0 73.61 55.7717.84 Both
chr 8 718864 718936 Met CAT cttctagcct atctccctac0 0 78.30 60.4717.83 Both
 
chr 18 842701 842629 Phe GAA ctccctgtat tcccatgagt0 0 76.09 58.4917.60 Both
 
chr 13 1071248 1071321 Pro GGG ccactatttt acttctttta0 0 67.00 40.9526.05 Both
chr 28 390146 390072 Pro TGG ctttcttgat tttcttaata0 0 78.14 54.1623.98 Both
 
chr 9 763201 763287 Ser CGA atctttttat attttctaat0 0 62.46 33.7928.67 Both
chr 16 927358 927270 Ser GCT ccgtctctat gttatttatt0 0 59.15 21.3037.85 Both
chr 19 837963 837877 Ser GGA agtacttgtt tctggcacat0 0 65.29 32.0233.27 Both
chr 4 263371 263455 Ser TGA attttcttaa attctttttg0 0 70.17 33.7536.42 Both
 
chr 2 53171 53243 Thr CGT ttgtaagtta tgcctaggta0 0 76.52 61.1015.42 Both
chr 20 713652 713581 Thr GGT tttgcgctaa aaagatattg0 0 75.30 57.0118.29 Both
chr 6 479293 479365 Thr TGT cacttcttaa attctttggg0 0 80.09 59.6820.41 Both
 
chr 21 712297 712225 Trp CCA cttgcctttt tattaggtaa0 0 70.24 58.6411.60 Both
 
chr 7 479373 479455 Tyr GTA gcaattcttt ggacttcact0 0 56.66 29.1427.52 Both
 
chr 30 258680 258607 Val GAC cgaattgttt actctcttta0 0 72.25 40.2332.02 Both
chr 22 601706 601634 Val TAC ttagtctttt agattgcgcg0 0 78.56 64.6813.88 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.