GtRNAdb

tRNAscan-SE Analysis of Callithrix jacchus (marmoset) (WUGSC 3.2 Mar 2009)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA357
Selenocysteine tRNAs (TCA)2
Possible suppressor tRNAs (CTA,TTA)1
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs360


Intron Summary

tRNAs with introns
28
Arg
TCT
4
Leu
CAA
5
Ile
TAT
5
Tyr
GTA
11
Cys
GCA
3


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
14
GGC
1
CGC
4
TGC
5
24
GlyACC
 
GCC
14
CCC
4
TCC
8
26
ProAGG
7
GGG
 
CGG
4
TGG
6
17
ThrAGT
8
GGT
 
CGT
4
TGT
6
18
ValAAC
6
GAC
 
CAC
9
TAC
3
18

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
9
GGA
 
CGA
3
TGA
4
ACT
 
GCT
8
 
 
 
 
24
ArgACG
6
GCG
 
CCG
3
TCG
4
 
 
 
 
CCT
5
TCT
5
23
LeuAAG
5
GAG
 
CAG
9
TAG
3
 
 
 
 
CAA
6
TAA
5
28

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
8
 
 
 
 
8
AsnATT
 
GTT
22
 
 
 
 
22
Lys 
 
 
 
CTT
8
TTT
12
20
AspATC
 
GTC
12
 
 
 
 
12
Glu 
 
 
 
CTC
12
TTC
10
22
HisATG
 
GTG
8
 
 
 
 
8
Gln 
 
 
 
CTG
9
TTG
6
15

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
9
GAT
2
 
 
TAT
5
16
Met 
 
 
 
CAT
15
 
 
15
TyrATA
 
GTA
11
 
 
 
 
11
Supres 
 
 
 
CTA
 
TTA
1
1
CysACA
 
GCA
24
 
 
 
 
24
Trp 
 
 
 
CCA
6
 
 
6
SelCys 
 
 
 
 
 
TCA
2
2

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.