Genomic tRNA Database: Callithrix jacchus (marmoset) (WUGSC 3.2 Mar 2009)

tRNAscan-SE Analysis of Callithrix jacchus (marmoset) (WUGSC 3.2 Mar 2009)

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>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 357
 Selenocysteine tRNAs (TCA) 2
 Possible suppressor tRNAs (CTA,TTA) 1
 tRNAs with undetermined 
 or unknown isotypes 0
 Predicted pseudogenes 0
 Total tRNAs 360
 
 
Intron Summary tRNAs with introns 
 28 Arg 
 TCT 
 4 Leu 
 CAA 
 5 Ile 
 TAT 
 5 Tyr 
 GTA 
 11 Cys 
 GCA 
 3

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 14 GGC 
 1 CGC 
 4 TGC 
 5 24
 Gly ACC 
   GCC 
 14 CCC 
 4 TCC 
 8 26
 Pro AGG 
 7 GGG 
   CGG 
 4 TGG 
 6 17
 Thr AGT 
 8 GGT 
   CGT 
 4 TGT 
 6 18
 Val AAC 
 6 GAC 
   CAC 
 9 TAC 
 3 18  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 9 GGA 
   CGA 
 3 TGA 
 4 ACT 
   GCT 
 8   
     
   24
 Arg ACG 
 6 GCG 
   CCG 
 3 TCG 
 4   
     
   CCT 
 5 TCT 
 5 23
 Leu AAG 
 5 GAG 
   CAG 
 9 TAG 
 3   
     
   CAA 
 6 TAA 
 5 28
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
   GAA 
 8   
     
   8
 Asn ATT 
   GTT 
 22   
     
   22
 Lys   
     
   CTT 
 8 TTT 
 12 20
 Asp ATC 
   GTC 
 12   
     
   12
 Glu   
     
   CTC 
 12 TTC 
 10 22
 His ATG 
   GTG 
 8   
     
   8
 Gln   
     
   CTG 
 9 TTG 
 6 15  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 9 GAT 
 2   
   TAT 
 5 16
 Met   
     
   CAT 
 15   
   15
 Tyr ATA 
   GTA 
 11   
     
   11
 Supres   
     
   CTA 
   TTA 
 1 1
 Cys ACA 
   GCA 
 24   
     
   24
 Trp   
     
   CCA 
 6   
   6
 SelCys   
     
     
   TCA 
 2 2

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.