GtRNAdb

tRNAscan-SE Analysis of Caenorhabditis japonica (WUGSC 3.0.2 Mar 2008)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA799
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
1
Predicted pseudogenes0
Total tRNAs801


Intron Summary

tRNAs with introns
36
Leu
CAA
7
Ile
TAT
4
Tyr
GTA
25


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
30
GGC
 
CGC
8
TGC
9
47
GlyACC
 
GCC
35
CCC
2
TCC
49
86
ProAGG
9
GGG
 
CGG
8
TGG
40
57
ThrAGT
24
GGT
 
CGT
10
TGT
11
45
ValAAC
23
GAC
 
CAC
13
TAC
7
43

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
18
GGA
 
CGA
13
TGA
7
ACT
 
GCT
14
 
 
 
 
52
ArgACG
21
GCG
 
CCG
2
TCG
12
 
 
 
 
CCT
3
TCT
12
50
LeuAAG
26
GAG
 
CAG
8
TAG
6
 
 
 
 
CAA
7
TAA
5
52

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
1
GAA
24
 
 
 
 
25
AsnATT
 
GTT
23
 
 
 
 
23
Lys 
 
 
 
CTT
37
TTT
29
66
AspATC
 
GTC
34
 
 
 
 
34
Glu 
 
 
 
CTC
40
TTC
20
60
HisATG
 
GTG
14
 
 
 
 
14
Gln 
 
 
 
CTG
14
TTG
12
26

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
27
GAT
 
 
 
TAT
7
34
Met 
 
 
 
CAT
28
 
 
28
TyrATA
 
GTA
25
 
 
 
 
25
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
14
 
 
 
 
14
Trp 
 
 
 
CCA
18
 
 
18
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.