GtRNAdb

tRNAscan-SE Analysis of Clostridium botulinum A Hall

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA80
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs81


Intron Summary

tRNAs with introns
0


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
 
GGC
 
CGC
 
TGC
3
3
GlyACC
 
GCC
3
CCC
1
TCC
4
8
ProAGG
 
GGG
 
CGG
 
TGG
3
3
ThrAGT
 
GGT
1
CGT
 
TGT
4
5
ValAAC
 
GAC
 
CAC
 
TAC
5
5

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
 
GGA
1
CGA
 
TGA
2
ACT
 
GCT
2
 
 
 
 
5
ArgACG
1
GCG
 
CCG
 
TCG
1
 
 
 
 
CCT
1
TCT
3
6
LeuAAG
 
GAG
1
CAG
 
TAG
2
 
 
 
 
CAA
1
TAA
2
6

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
2
 
 
 
 
2
AsnATT
 
GTT
3
 
 
 
 
3
Lys 
 
 
 
CTT
2
TTT
4
6
AspATC
 
GTC
4
 
 
 
 
4
Glu 
 
 
 
CTC
1
TTC
3
4
HisATG
 
GTG
2
 
 
 
 
2
Gln 
 
 
 
CTG
1
TTG
2
3

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
 
GAT
2
 
 
TAT
 
2
Met 
 
 
 
CAT
8
 
 
8
TyrATA
 
GTA
2
 
 
 
 
2
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
2
 
 
 
 
2
Trp 
 
 
 
CCA
1
 
 
1
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.