GtRNAdb

tRNAscan-SE Analysis of Clostridium botulinum B Eklund 17B

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA77
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs77


Intron Summary

tRNAs with introns
0


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
 
GGC
 
CGC
 
TGC
3
3
GlyACC
 
GCC
2
CCC
 
TCC
3
5
ProAGG
 
GGG
 
CGG
 
TGG
1
1
ThrAGT
 
GGT
1
CGT
 
TGT
4
5
ValAAC
 
GAC
 
CAC
 
TAC
5
5

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
 
GGA
1
CGA
 
TGA
2
ACT
 
GCT
2
 
 
 
 
5
ArgACG
1
GCG
 
CCG
 
TCG
1
 
 
 
 
CCT
1
TCT
4
7
LeuAAG
 
GAG
 
CAG
 
TAG
2
 
 
 
 
CAA
1
TAA
3
6

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
2
 
 
 
 
2
AsnATT
 
GTT
4
 
 
 
 
4
Lys 
 
 
 
CTT
2
TTT
5
7
AspATC
 
GTC
3
 
 
 
 
3
Glu 
 
 
 
CTC
1
TTC
3
4
HisATG
 
GTG
2
 
 
 
 
2
Gln 
 
 
 
CTG
 
TTG
2
2

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
 
GAT
2
 
 
TAT
 
2
Met 
 
 
 
CAT
7
 
 
7
TyrATA
 
GTA
3
 
 
 
 
3
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
2
 
 
 
 
2
Trp 
 
 
 
CCA
2
 
 
2
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.