GtRNAdb

tRNAscan-SE Analysis of Cavia porcellus (Guinea pig) (Broad Feb 2008)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA382
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)1
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs384


Intron Summary

tRNAs with introns
28
Arg
TCT
4
Leu
CAA
5
Ile
TAT
4
Tyr
GTA
15


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
28
GGC
4
CGC
5
TGC
9
46
GlyACC
 
GCC
11
CCC
6
TCC
6
23
ProAGG
8
GGG
 
CGG
3
TGG
4
15
ThrAGT
10
GGT
 
CGT
3
TGT
4
17
ValAAC
6
GAC
1
CAC
6
TAC
3
16

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
8
GGA
 
CGA
4
TGA
3
ACT
 
GCT
10
 
 
 
 
25
ArgACG
7
GCG
 
CCG
3
TCG
4
 
 
 
 
CCT
5
TCT
5
24
LeuAAG
5
GAG
 
CAG
6
TAG
3
 
 
 
 
CAA
6
TAA
4
24

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
8
 
 
 
 
8
AsnATT
 
GTT
18
 
 
 
 
18
Lys 
 
 
 
CTT
26
TTT
11
37
AspATC
1
GTC
10
 
 
 
 
11
Glu 
 
 
 
CTC
5
TTC
6
11
HisATG
 
GTG
8
 
 
 
 
8
Gln 
 
 
 
CTG
8
TTG
4
12

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
10
GAT
 
 
 
TAT
5
15
Met 
 
 
 
CAT
15
 
 
15
TyrATA
 
GTA
15
 
 
 
 
15
Supres 
 
 
 
CTA
1
TTA
 
1
CysACA
 
GCA
34
 
 
 
 
34
Trp 
 
 
 
CCA
8
 
 
8
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.