GtRNAdb

tRNAscan-SE Analysis of Caenorhabditis remanei (WUGSC 1.0 Mar 2006)

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA782
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)2
tRNAs with undetermined
or unknown isotypes
9
Predicted pseudogenes177
Total tRNAs971


Intron Summary

tRNAs with introns
55
Ala
GGC
1
Gly
ACC
4
Pro
AGG
10
Leu
CAA
12
Ile
TAT
4
Tyr
GTA
24


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
26
GGC
1
CGC
6
TGC
13
46
GlyACC
 
GCC
23
CCC
6
TCC
44
73
ProAGG
8
GGG
4
CGG
6
TGG
36
54
ThrAGT
20
GGT
1
CGT
6
TGT
11
38
ValAAC
27
GAC
 
CAC
9
TAC
4
40

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
17
GGA
 
CGA
7
TGA
11
ACT
1
GCT
10
 
 
 
 
46
ArgACG
28
GCG
 
CCG
2
TCG
12
 
 
 
 
CCT
4
TCT
14
60
LeuAAG
22
GAG
1
CAG
5
TAG
8
 
 
 
 
CAA
12
TAA
6
54

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
18
 
 
 
 
18
AsnATT
1
GTT
22
 
 
 
 
23
Lys 
 
 
 
CTT
48
TTT
21
69
AspATC
 
GTC
39
 
 
 
 
39
Glu 
 
 
 
CTC
22
TTC
24
46
HisATG
1
GTG
21
 
 
 
 
22
Gln 
 
 
 
CTG
10
TTG
22
32

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
26
GAT
1
 
 
TAT
13
40
Met 
 
 
 
CAT
27
 
 
27
TyrATA
 
GTA
23
 
 
 
 
23
Supres 
 
 
 
CTA
 
TTA
2
2
CysACA
 
GCA
15
 
 
 
 
15
Trp 
 
 
 
CCA
17
 
 
17
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.