GtRNAdb

tRNAscan-SE Analysis of Caenorhabditis remanei (WUGSC 15.0.1 May 2007)

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>> Genome Seq
tRNA Gene Summary




tRNAs Decoding Standard 20 AA789
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)2
tRNAs with undetermined
or unknown isotypes
8
Predicted pseudogenes159
Total tRNAs958


Intron Summary

tRNAs with introns
48
Ala
GGC
1
Gly
ACC
2
Pro
AGG
8
Leu
CAA
12
Ile
TAT
4
Tyr
GTA
21


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
29
GGC
1
CGC
6
TGC
13
49
GlyACC
 
GCC
25
CCC
6
TCC
49
80
ProAGG
8
GGG
2
CGG
6
TGG
39
55
ThrAGT
19
GGT
 
CGT
6
TGT
10
35
ValAAC
29
GAC
 
CAC
9
TAC
4
42

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
16
GGA
 
CGA
5
TGA
10
ACT
 
GCT
10
 
 
 
 
41
ArgACG
28
GCG
 
CCG
2
TCG
11
 
 
 
 
CCT
5
TCT
13
59
LeuAAG
24
GAG
1
CAG
4
TAG
8
 
 
 
 
CAA
12
TAA
6
55

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
18
 
 
 
 
18
AsnATT
1
GTT
23
 
 
 
 
24
Lys 
 
 
 
CTT
46
TTT
21
67
AspATC
 
GTC
40
 
 
 
 
40
Glu 
 
 
 
CTC
25
TTC
23
48
HisATG
1
GTG
24
 
 
 
 
25
Gln 
 
 
 
CTG
11
TTG
24
35

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
25
GAT
1
 
 
TAT
14
40
Met 
 
 
 
CAT
25
 
 
25
TyrATA
 
GTA
20
 
 
 
 
20
Supres 
 
 
 
CTA
 
TTA
2
2
CysACA
 
GCA
15
 
 
 
 
15
Trp 
 
 
 
CCA
16
 
 
16
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.