GtRNAdb

tRNAscan-SE Analysis of Cryptococcus neoformans var JEC21

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA141
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes2
Total tRNAs143


Intron Summary

tRNAs with introns
132
Ala
AGC
7
Ala
CGC
2
Ala
TGC
1
Gly
GCC
5
Gly
CCC
2
Gly
TCC
1
Pro
AGG
5
Pro
CGG
1
Pro
TGG
1
Thr
AGT
5
Thr
CGT
1
Thr
TGT
1
Val
AAC
7
Val
CAC
2
Ser
AGA
6
Ser
CGA
1
Ser
TGA
1
Ser
GCT
2
Arg
ACG
3
Arg
CCG
1
Arg
TCG
5
Arg
CCT
3
Arg
TCT
1
Leu
AAG
6
Leu
CAG
1
Leu
CAA
3
Leu
TAA
1
Phe
GAA
5
Asn
GTT
4
Lys
CTT
7
Lys
TTT
1
Asp
GTC
1
Glu
CTC
9
Glu
TTC
3
His
GTG
2
Gln
TTG
2
Ile
AAT
6
Ile
TAT
1
Met
CAT
6
Tyr
GTA
4
Cys
GCA
3
Trp
CCA
3
 


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
7
GGC
 
CGC
2
TGC
1
10
GlyACC
 
GCC
9
CCC
2
TCC
3
14
ProAGG
5
GGG
 
CGG
1
TGG
1
7
ThrAGT
5
GGT
 
CGT
1
TGT
1
7
ValAAC
7
GAC
 
CAC
2
TAC
 
9

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
6
GGA
 
CGA
 
TGA
1
ACT
 
GCT
1
 
 
 
 
8
ArgACG
3
GCG
 
CCG
1
TCG
5
 
 
 
 
CCT
3
TCT
1
13
LeuAAG
6
GAG
 
CAG
1
TAG
 
 
 
 
 
CAA
3
TAA
1
11

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
5
 
 
 
 
5
AsnATT
 
GTT
4
 
 
 
 
4
Lys 
 
 
 
CTT
7
TTT
1
8
AspATC
 
GTC
1
 
 
 
 
1
Glu 
 
 
 
CTC
9
TTC
3
12
HisATG
 
GTG
4
 
 
 
 
4
Gln 
 
 
 
CTG
3
TTG
2
5

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
6
GAT
 
 
 
TAT
1
7
Met 
 
 
 
CAT
6
 
 
6
TyrATA
 
GTA
4
 
 
 
 
4
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
3
 
 
 
 
3
Trp 
 
 
 
CCA
3
 
 
3
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.