GtRNAdb

tRNAscan-SE Analysis of Desulfotalea psychrophila LSv54

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> UCSC Genome Browser
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGTATAGCTCAGCTGGGAGAGCGCGTGACTGGCAGTCACGAG...........GtCAGCGGTTCGATCCCGCTTACCTCCACCA chr.trna51-AlaGGC Sc: 85.79 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGATTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTATCCTCCACCA chr.trna5-AlaTGC Sc: 93.84 GGGGGATTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTATCCTCCACCA chr.trna48-AlaTGC Sc: 93.84

Arg tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCACCAGTAGCTCAGCTGGAtAGAGTACTTGACTACGAATCAAGGA...........GtCGCAGGTTCGAATCCTGCCTGGTGCACCA chr.trna23-ArgACG Sc: 89.14 GCACCAGTAGCTCAGCTGGAtAGAGTACTTGACTACGAATCAAGGA...........GtCGCAGGTTCGAATCCTGCCTGGTGCACCA chr.trna22-ArgACG Sc: 89.14 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCACTCGTAGCTCAGCTGGAtAGAGCACCAGGCTTCGAACCTGGGT...........GtCAGGGGTTCGAATCCCTTCGGGTGCACCA chr.trna52-ArgTCG Sc: 90.76 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTCCCGTAGCTCAGCTGGAtAGAGCATCTGCCTCCTAAGCAGAGG...........GtCAGGCGTTCGAATCGCCTCGGGATCACCA chr.trna12-ArgCCT Sc: 87.09 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCGTAGCTCAGCTGGAtAGAGCAACGGACTTCTAATCCGTAG...........GcCGCTGGTTCGAATCCAGCCGGGCGCACCA chr.trna6-ArgTCT Sc: 95.41

Asn tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCTCGGTAGCTCAGTTGGTAGAGCGGGTGACTGTTAATCACCTT...........GtCGGCGGTTCGAATCCGTCCCGGGGAGCCA chr.trna57-AsnGTT Sc: 86.12

Asp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGAGTGGTAGTTCAGTTGGTtAGAATGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAACCCCGTCCGCTCCGCCA chr.trna37-AspGTC Sc: 91.30 GGAGTGGTAGTTCAGTTGGTtAGAATGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAACCCCGTCCGCTCCGCCA chr.trna33-AspGTC Sc: 91.30 GGAGTGGTAGTTCAGTTGGTtAGAATGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAACCCCGTCCGCTCCGCCA chr.trna31-AspGTC Sc: 91.30 GGAGTGGTAGTTCAGTTGGTtAGAATGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAACCCCGTCCGCTCCGCCA chr.trna29-AspGTC Sc: 91.30 GGAGTGGTAGTTCAGTTGGTtAGAATGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAACCCCGTCCGCTCCGCCA chr.trna27-AspGTC Sc: 91.30 GGAGTGGTAGTTCAGCTGGTtAGAATGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAACCCCGTCCGCTCCGCCA chr.trna35-AspGTC Sc: 90.44

Cys tRNAs

>>>>>>>..>>>..........<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGCGACGTGGCCAAGTGGTA.AGGCACTGGTCTGCAAAACCATGA...........TtCAGCGGTTCAAATCCGCTCGTCGCCTCCA chr.trna49-CysGCA Sc: 77.50

Gln tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGCGTCGCCAAGCGGTA.AGGCACCAGGTTTTGATCCTGGCA...........TgCGTAGGTTCGAATCCTGCCGCCCCAGCCA chr.trna25-GlnTTG Sc: 71.29 TGGGGCGTCGCCAAGCGGTA.AGGCACCAGGTTTTGATCCTGGCA...........TgCGTAGGTTCGAATCCTGCCGCCCCAGCCA chr.trna24-GlnTTG Sc: 71.29

Glu tRNAs

>>>>>>>..>>>>............<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCCCCATCGTCTAGC..GGTt.A.GGACGTTGGCCTCTCACGCCGAAA...........GCAGGGGTTCGATTCCCCTTGGGGTCACCA chr.trna19-GluCTC Sc: 69.11 GGCCCCATCGTCTAGC..GGTt.A.GGACGTTGGCCTCTCACGCCGAAA...........GCAGGGGTTCGATTCCCCTTGGGGTCACCA chr.trna18-GluCTC Sc: 69.11 >>>>>>>..>>>>............<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GTCCTCATCGTCTAGTCaGGTctA.GGACACCGCCCTTTCACGGCGGCA...........ACAGGGGTTCGAATCCCCTTGGGGACGCCA chr.trna56-GluTTC Sc: 59.52 GTCCCTATCGTCTAGTCaGGTccA.GGACACCGCCCTTTCACGGCGGCA...........ACAGGGGTTCGAATCCCCTTGGGGACGCCA chr.trna54-GluTTC Sc: 58.23

Gly tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAGTAACTCAGT.GGTA.GAGTGCAACCTTGCCAAGGTTGAC...........GtCGCGAGTCCGAATCTCGTCTCCCGCTCCA chr.trna60-GlyGCC Sc: 73.41 GCGGGAGTAACTCAGT.GGTA.GAGTGCAACCTTGCCAAGGTTGAC...........GtCGCGAGTCCGAATCTCGTCTCCCGCTCCA chr.trna46-GlyGCC Sc: 73.41 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAATAGCTCAATTGGTA.GAGCATCAGCCTTCCAAGCTGAGG...........GtTGCGAGTCCGAGTCTCGTTTCCCGCTCCA chr.trna9-GlyTCC Sc: 86.33

His tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGGCGTGGCTCAGTTGGTtAGAGCACCTGGTTGTGACCCAGGAA...........GtCGGGGGTTCGAGTCCCCTCGCTCACCCCA chr.trna17-HisGTG Sc: 87.64 GTGGGCGTGGCTCAATTGGTtAGAGCACCTGGTTGTGACCCAGGAA...........GtCGGGGGTTCGAGTCCCCTCGCTCACCCCA chr.trna38-HisGTG Sc: 85.72

Ile tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGGTGGTTCAAATCCACCTAGGCCCACCA chr.trna47-IleGAT Sc: 100.93 GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGGTGGTTCAAATCCACCTAGGCCCACCA chr.trna4-IleGAT Sc: 100.93

Leu tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGAAGTGGTGGAATTGGTaGACGCGCACGATTGAGGGTCGTGTGGG.GCAA....CCCATGTCGGTTCGACCCCGAC.CTTCGGCACCA chr.trna64-LeuGAG Sc: 58.20 GCCGAAGTGGTGGAATTGGTaGACGCGCACGATTGAGGGTCGTGTGGG.GCAA....CCCATGTCGGTTCGACCCCGAC.CTTCGGCACCA chr.trna63-LeuGAG Sc: 58.20 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGAAGTGGCGGAATTGGTaGACGCGCTAGGTTCAGGGTCTAGTGGGGGTAA...CCCCGTGGAAGTTCGAGTCTTCT.CTTCGGCACCA chr.trna50-LeuCAG Sc: 67.26 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<.... GCGAGGGTGGCGGAACTGGTaGACGCACCAGACTTAGGATCTGGCGCC.TTAC....GGTGTGGGGGTTCGACTCCCCC.CTCTCGCACCA chr.trna14-LeuTAG Sc: 71.50 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGGAGTGGTGAAATAGGTaGACGCACGGGATTCAAAATCCCGCGGGGGTAA...CCCCGTGTCGGTTCGATTCCGAC.CTCCGGCACCA chr.trna61-LeuCAA Sc: 73.76 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCTGGATGGTGGAACTGGTaGACACCCGAGACTTAAAATCTCGTGGGCTTCG...GCCCGTGCGAGTTCGATTCTCGC.TCTAGGCACCA chr.trna43-LeuTAA Sc: 66.58

Lys tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCGTTAACTCAGCTGGTAGAGTATCTGACTTTTAATCAGAGA...........GtCGCGCGTTCGAGCCGCGCACGCCCCACCA chr.trna55-LysTTT Sc: 87.14 GGGGCGTTAACTCAGCTGGTAGAGTATCTGACTTTTAATCAGAGA...........GtCGCGCGTTCGAGCCGCGCACGCCCCACCA chr.trna53-LysTTT Sc: 87.14

Met tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGCATAGCTCAGTT.GGTcAGAGCCACCGGCTCATAACCGGTCG...........GtCGTAGGTTCGAATCCTACTGCGCCCACCA chr.trna59-MetCAT Sc: 94.61 GGCGATGTAGCTCAGTC.GGTtAGAGCATACGGCTCATATCCGTAGT...........GtCCGGGGTTCGATTCCCTGTATCGCCACCA chr.trna62-MetCAT Sc: 87.19 .>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGTTtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCCCCCGCTACCA chr.trna42-MetCAT Sc: 86.53 CGCGGGGTGGAGCAGTTtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCCCCCGCTACCA chr.trna41-MetCAT Sc: 86.53 CGCGGGGTGGAGCAGTTtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCCCCCGCTACCA chr.trna15-MetCAT Sc: 86.53

Phe tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<.... GCCGGGATAGCTCAGTCGGTAGAGCAACGGACTGAAAATCCGTGT...........GtCCCTGGTTCGATTCCTGGTCCCGGCACCA chr.trna40-PheGAA Sc: 90.13 GCCGGGATAGCTCAGTCGGTAGAGCAACGGACTGAAAATCCGTGT...........GtCCCTGGTTCGATTCCTGGTCCCGGCACCA chr.trna39-PheGAA Sc: 90.13

Pro tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGAATGTAGCGCAGCCtGGTtAGCGCACTTGTCTGGGGGACAAGGG...........GcCGGAGGTTCGAATCCTCTCATTCCGACCA chr.trna45-ProGGG Sc: 77.59 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTAGCGCAGCCtGGTtAGCGCGCCTGCCTTGGGAGCAGGAG...........GcCGTAGGTTCGAATCCTACCGCCCCGACCA chr.trna58-ProTGG Sc: 90.80

SeC tRNAs

>>>>>>>....>>>>........<<<<..>>>>>.......<<<<<...>>>>>>>.....<<<<<<<..>>>>>.......<<<<<...<<<<<<<.... GGAAGTGgacGGAGCACTGGTG.GCTCccCCGGATTTCAAATCCGGTGtAACGGGTTAATaGCTCGTTAGGTGGGTTCGATTCCCAT..gCACTTCC.... chr.trna1-SeC(p)TCA Sc: 28.39

Ser tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>..........<<<<.>>>>>.......<<<<<..<<<<<<<.... GGAGAGGTGACCGAGTGGCttA.AGGTGCACGCCTGGAAAGCGTGTGTAC...GCAA...GTACCGAGAGTTCGAATCTCTC..CTTTTCCGCCA chr.trna13-SerGGA Sc: 61.30 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>..........<<<<.>>>>>.......<<<<<..<<<<<<<.... GGAGGAATGGCCGAGTGGTtgA.AGGCGGCGGTCTTGAAAACCGTTGTAC...GAAA...GTACCGTGGGTTCGAATCCTAC..TTCCTCCGCCA chr.trna2-SerTGA Sc: 74.62 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<..<<<<<<<.... GGAGGGGTGACCGAGAGGCcgA.TGGTGCTCGCCTGCTAAGCGAGTGTGGGGGTCAGACTCCACCGAGGGTTCGAATCCCTC..CTCCTCCGCCA chr.trna3-SerGCT Sc: 55.10

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCACATAGCTCAGTTGGTAGAGCGCATCCTTGGTAAGGATGAG...........GtCACCGGTTCGACTCCGGTTGTGGGCTCCA chr.trna21-ThrGGT Sc: 93.39 GCCCACATAGCTCAGTTGGTAGAGCGCATCCTTGGTAAGGATGAG...........GtCACCGGTTCAACTCCGGTTGTGGGCTCCA chr.trna10-ThrGGT Sc: 92.27 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCAACATAGCTCAGTTGGTAGAGCGACGCTCTCGTAAAGCGTAG...........GcCAGCGGTTCGATCCCGCTTGTTGGCTCCA chr.trna16-ThrCGT Sc: 84.06 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... GCTGGCGTAGCTCAACTGGAAGAGCAGCTGATTTGTAATCAGCAG...........GtTGCGGGTTCAAGTCCCATCGCCAGCTCCA chr.trna7-ThrTGT Sc: 83.47

Trp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGCCAGTAGCTCtAATTGGTAGAGCGCCGGATTCCAAATCCGGAT...........GcTGGGGGTTCGAGTCCCTCCTGGCCTGCCA chr.trna11-TrpCCA Sc: 76.45

Tyr tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGGGGTTCCCGAGTGGTtaA.AGGGATCAGACTGTAAATCTGACGGCTCA.....GCCTtCGAAGGTTCGAATCCTTC.CCCCTCCACCA chr.trna8-TyrGTA Sc: 77.12 GGAGGGGTTCCCGAGTGGTtaA.AGGGATCAGACTGTAAATCTGACGGCTCA.....GCCTtCGAAGGTTCGAATCCTTC.CCCCTCCACCA chr.trna20-TyrGTA Sc: 77.12

Val tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGCGCGTAGCTCAGT.GGGA.GAGCGCCACCTTGACGTGGTGGAT...........GtCGGCGGTTCAATCCCGCCCGCGCCTACCA chr.trna44-ValGAC Sc: 80.94 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGACTAGCTCAGCTGGGA.GAGCATCGGCCTTACAAGCCGAGG...........GtCACAGGTTCAAGCCCTGTGTCGCCCACCA chr.trna36-ValTAC Sc: 93.49 GGGCGACTAGCTCAGCTGGGA.GAGCATCGGCCTTACAAGCCGAGG...........GtCACAGGTTCAAGCCCTGTGTCGCCCACCA chr.trna34-ValTAC Sc: 93.49 GGGCGACTAGCTCAGCTGGGA.GAGCATCGGCCTTACAAGCCGAGG...........GtCACAGGTTCAAGCCCTGTGTCGCCCACCA chr.trna32-ValTAC Sc: 93.49 GGGCGACTAGCTCAGCTGGGA.GAGCATCGGCCTTACAAGCCGAGG...........GtCACAGGTTCAAGCCCTGTGTCGCCCACCA chr.trna30-ValTAC Sc: 93.49 GGGCGACTAGCTCAGCTGGGA.GAGCATCGGCCTTACAAGCCGAGG...........GtCACAGGTTCAAGCCCTGTGTCGCCCACCA chr.trna28-ValTAC Sc: 93.49 GGGCGACTAGCTCAGCTGGGA.GAGCATCGGCCTTACAAGCCGAGG...........GtCACAGGTTCAAGCCCTGTGTCGCCCACCA chr.trna26-ValTAC Sc: 93.49

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.