GtRNAdb

tRNAscan-SE Analysis of Desulfotalea psychrophila LSv54

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> UCSC Genome Browser
>> Genome DB
>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 363837 363930 SeC(p) TCA aagttaagtt gccacaacat0 0 28.39 0.000.00 Eufind
chr 2 785819 785904 Ser TGA aagcacgcgt cgttttctgg0 0 74.62 47.2527.37 Both
chr 3 785913 786004 Ser GCT cacgttttct gaaatagaaa0 0 55.10 31.5523.55 Both
chr 4 807931 808007 Ile GAT tcctggacac tgatggggga0 0 100.93 78.8222.11 Both
chr 5 808012 808087 Ala TGC ccaccatgat ctcatggttt0 0 93.84 76.3117.53 Both
chr 6 1046821 1046897 Arg TCT gagaccttat ataaatataa0 0 95.41 74.1921.22 Both
chr 7 1253753 1253828 Thr TGT gttcccacag agtttgtata0 0 83.47 67.3416.13 Both
chr 8 1253904 1253988 Tyr GTA gtcatcgtgt ttcgattttg0 0 77.12 46.6430.48 Both
chr 9 1254007 1254082 Gly TCC tgtatagcaa tttttttaaa0 0 86.33 64.1222.21 Both
chr 10 1254102 1254177 Thr GGT atagttagtt caaagaacaa0 0 92.27 68.1924.08 Both
chr 11 1255658 1255734 Trp CCA attcttgtgc tgttttattg0 0 76.45 57.2119.24 Both
chr 12 1305273 1305349 Arg CCT gaaaaaatat gttatataag0 0 87.09 59.5727.52 Both
chr 13 1606558 1606643 Ser GGA caacagttgt cggtttttta0 0 61.30 33.1228.18 Both
chr 14 1791402 1791486 Leu TAG aacatgttgt caattttgga0 0 71.50 50.2321.27 Both
chr 15 2106124 2106200 Met CAT gttcacgtaa atttcaaaaa0 0 86.53 62.5124.02 Both
chr 16 2262518 2262593 Thr CGT aaagctgtga agaaattcaa0 0 84.06 55.5628.50 Both
chr 17 2426698 2426774 His GTG taaacatgtg ttttttataa0 0 87.64 68.7818.86 Both
chr 18 2853780 2853854 Glu CTC gcctgcactt agttgaaaag0 0 69.11 50.1318.98 Both
chr 19 2874486 2874560 Glu CTC ctcagcactt agatactaaa0 0 69.11 50.1318.98 Both
chr 20 3358386 3358470 Tyr GTA aacaatgagt ttcgattttg0 0 77.12 46.6430.48 Both
chr 21 3358582 3358657 Thr GGT atagttcgtt gtaatacctc0 0 93.39 69.3124.08 Both
chr 22 3403959 3403883 Arg ACG cgtcttgagc cttgtaaaaa0 0 89.14 68.3220.82 Both
chr 23 3396342 3396266 Arg ACG catcttcgct tttgttaaaa0 0 89.14 68.3220.82 Both
chr 24 3096676 3096602 Gln TTG tttgatggtt cttttgttac0 0 71.29 47.8623.43 Both
chr 25 3096416 3096342 Gln TTG tttgtgagga atcttttcaa0 0 71.29 47.8623.43 Both
chr 26 2889552 2889477 Val TAC ccttacgagg agattcaaac0 0 93.49 69.7923.70 Both
chr 27 2889417 2889341 Asp GTC gaaaaatgct ttctttttta0 0 91.30 74.1617.14 Both
chr 28 2889322 2889247 Val TAC tagtagtttc tttgatattt0 0 93.49 69.7923.70 Both
chr 29 2889191 2889115 Asp GTC aaaggtagtt ttcttttttt0 0 91.30 74.1617.14 Both
chr 30 2889095 2889020 Val TAC tagtagtttc tttgatattt0 0 93.49 69.7923.70 Both
chr 31 2888964 2888888 Asp GTC aaaggtagtt ttctttttta0 0 91.30 74.1617.14 Both
chr 32 2888869 2888794 Val TAC tagtagtttc tttgatattt0 0 93.49 69.7923.70 Both
chr 33 2888738 2888662 Asp GTC aaaggtagtt tttttttttt0 0 91.30 74.1617.14 Both
chr 34 2888642 2888567 Val TAC tagtagtttc tttgatattt0 0 93.49 69.7923.70 Both
chr 35 2888511 2888435 Asp GTC aaaggtagtt ttcttttttt0 0 90.44 73.3017.14 Both
chr 36 2888414 2888339 Val TAC tagtagtttc tttgatattt0 0 93.49 69.7923.70 Both
chr 37 2888283 2888207 Asp GTC aaaggtagtt tttatgaaaa0 0 91.30 74.1617.14 Both
chr 38 2607832 2607756 His GTG aaaataagcg tttatataaa0 0 85.72 66.8618.86 Both
chr 39 2024869 2024794 Phe GAA gcaatgaggt ttcattggta0 0 90.13 71.2318.90 Both
chr 40 2009564 2009489 Phe GAA gcaatgaggt ttcattggta0 0 90.13 71.2318.90 Both
chr 41 1947022 1946946 Met CAT cggctcgtaa gttttaaaag0 0 86.53 62.5124.02 Both
chr 42 1946920 1946844 Met CAT ttgcacgtaa gttataaaaa0 0 86.53 62.5124.02 Both
chr 43 1787980 1787894 Leu TAA aagctactat tatagtggat0 0 66.58 31.7934.79 Both
chr 44 1594939 1594865 Val GAC aagtgtggac gttttatagg0 0 80.94 57.1923.75 Both
chr 45 1586641 1586564 Pro GGG actcctgtgt ttatttgcat0 0 77.59 50.4827.11 Both
chr 46 1483010 1482936 Gly GCC acgcatacga atatacgata0 0 73.41 45.7027.71 Both
chr 47 1462154 1462078 Ile GAT tcctggacac tgatggggga0 0 100.93 78.8222.11 Both
chr 48 1462073 1461998 Ala TGC ccaccatgat catcatgatt0 0 93.84 76.3117.53 Both
chr 49 1389600 1389526 Cys GCA tgcacaacgg gtaattgaaa0 0 77.50 56.4721.03 Both
chr 50 1236485 1236399 Leu CAG catcctcgtt aattactcaa0 0 67.26 37.9529.31 Both
chr 51 1217809 1217734 Ala GGC caccagatgt ccattgcaaa0 0 85.79 65.8019.99 Both
chr 52 1172018 1171942 Arg TCG tgcacgttgt gaaattatcc0 0 90.76 71.9718.79 Both
chr 53 766714 766639 Lys TTT gctcgcaagg ttgctttcca0 0 87.14 57.2229.92 Both
chr 54 766622 766545 Glu TTC tccatgattt agatttataa0 0 58.23 32.7525.48 tRNAscan
chr 55 763275 763200 Lys TTT ccacgcaagt cgcacttgtc0 0 87.14 57.2229.92 Both
chr 56 763192 763115 Glu TTC ccacgcactt agacataaaa0 0 59.52 32.7726.75 Both
chr 57 721424 721349 Asn GTT gcttctgtgt agtacattcg0 0 86.12 61.9224.20 Both
chr 58 721311 721234 Pro TGG tttatatagt tcgaataaaa0 0 90.80 68.6122.19 Both
chr 59 694797 694721 Met CAT attgctcagc atgtttaatg0 0 94.61 72.0922.52 Both
chr 60 671952 671878 Gly GCC gcgcatatat tatataaagc0 0 73.41 45.7027.71 Both
chr 61 455538 455452 Leu CAA agatgggcat tttgacattt0 0 73.76 44.8128.95 Both
chr 62 204950 204874 Met CAT ttcacagcgc agttattcca0 0 87.19 66.0021.19 Both
chr 63 109530 109446 Leu GAG aattttgtgt aatttaaagg0 0 58.20 30.7727.43 Both
chr 64 109206 109122 Leu GAG aattttgtgt aatttaaagg0 0 58.20 30.7727.43 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.