GtRNAdb

tRNAscan-SE Analysis of Desulfotalea psychrophila LSv54

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> UCSC Genome Browser
>> Genome DB
>> Genome Seq
Predicted tRNA Secondary Structures


Click on "View tRNA" buttons to view 2-D tRNA structures

Cove-predicted tRNA secondary structures rendered by NAVIEW (c) 1988 Robert E. Bruccoleri


chr.trna51 (1217809-1217734)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (1217776-1217774)	Score: 85.79
Seq: GGGGGTATAGCTCAGCTGGGAGAGCGCGTGACTGGCAGTCACGAGGtCAGCGGTTCGATCCCGCTTACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna48 (1462073-1461998)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (1462040-1462038)	Score: 93.84
Seq: GGGGGATTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna5 (808012-808087)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (808045-808047)	Score: 93.84
Seq: GGGGGATTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna22 (3403959-3403883)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (3403925-3403923)	Score: 89.14
Seq: GCACCAGTAGCTCAGCTGGAtAGAGTACTTGACTACGAATCAAGGAGtCGCAGGTTCGAATCCTGCCTGGTGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna23 (3396342-3396266)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (3396308-3396306)	Score: 89.14
Seq: GCACCAGTAGCTCAGCTGGAtAGAGTACTTGACTACGAATCAAGGAGtCGCAGGTTCGAATCCTGCCTGGTGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna12 (1305273-1305349)	Length: 77 bp
Type: Arg	Anticodon: CCT at 35-37 (1305307-1305309)	Score: 87.09
Seq: GGTCCCGTAGCTCAGCTGGAtAGAGCATCTGCCTCCTAAGCAGAGGGtCAGGCGTTCGAATCGCCTCGGGATCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna52 (1172018-1171942)	Length: 77 bp
Type: Arg	Anticodon: TCG at 35-37 (1171984-1171982)	Score: 90.76
Seq: GCACTCGTAGCTCAGCTGGAtAGAGCACCAGGCTTCGAACCTGGGTGtCAGGGGTTCGAATCCCTTCGGGTGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna6 (1046821-1046897)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (1046855-1046857)	Score: 95.41
Seq: GCGCCCGTAGCTCAGCTGGAtAGAGCAACGGACTTCTAATCCGTAGGcCGCTGGTTCGAATCCAGCCGGGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna57 (721424-721349)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (721391-721389)	Score: 86.12
Seq: TCCTCGGTAGCTCAGTTGGTAGAGCGGGTGACTGTTAATCACCTTGtCGGCGGTTCGAATCCGTCCCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna35 (2888511-2888435)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (2888477-2888475)	Score: 90.44
Seq: GGAGTGGTAGTTCAGCTGGTtAGAATGCCGGCCTGTCACGCCGGAGGtCGCGGGTTCGAACCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna27 (2889417-2889341)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (2889383-2889381)	Score: 91.30
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATGCCGGCCTGTCACGCCGGAGGtCGCGGGTTCGAACCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna29 (2889191-2889115)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (2889157-2889155)	Score: 91.30
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATGCCGGCCTGTCACGCCGGAGGtCGCGGGTTCGAACCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna31 (2888964-2888888)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (2888930-2888928)	Score: 91.30
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATGCCGGCCTGTCACGCCGGAGGtCGCGGGTTCGAACCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna33 (2888738-2888662)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (2888704-2888702)	Score: 91.30
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATGCCGGCCTGTCACGCCGGAGGtCGCGGGTTCGAACCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna37 (2888283-2888207)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (2888249-2888247)	Score: 91.30
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATGCCGGCCTGTCACGCCGGAGGtCGCGGGTTCGAACCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna49 (1389600-1389526)	Length: 75 bp
Type: Cys	Anticodon: GCA at 33-35 (1389568-1389566)	Score: 77.50
Seq: GGCGACGTGGCCAAGTGGTAAGGCACTGGTCTGCAAAACCATGATtCAGCGGTTCAAATCCGCTCGTCGCCTCCA
Str: >>>>>>>..>>>.........<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
                    
chr.trna24 (3096676-3096602)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (3096644-3096642)	Score: 71.29
Seq: TGGGGCGTCGCCAAGCGGTAAGGCACCAGGTTTTGATCCTGGCATgCGTAGGTTCGAATCCTGCCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna25 (3096416-3096342)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (3096384-3096382)	Score: 71.29
Seq: TGGGGCGTCGCCAAGCGGTAAGGCACCAGGTTTTGATCCTGGCATgCGTAGGTTCGAATCCTGCCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna18 (2853780-2853854)	Length: 75 bp
Type: Glu	Anticodon: CTC at 34-36 (2853813-2853815)	Score: 69.11
Seq: GGCCCCATCGTCTAGCGGTtAGGACGTTGGCCTCTCACGCCGAAAGCAGGGGTTCGATTCCCCTTGGGGTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna19 (2874486-2874560)	Length: 75 bp
Type: Glu	Anticodon: CTC at 34-36 (2874519-2874521)	Score: 69.11
Seq: GGCCCCATCGTCTAGCGGTtAGGACGTTGGCCTCTCACGCCGAAAGCAGGGGTTCGATTCCCCTTGGGGTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna54 (766622-766545)	Length: 78 bp
Type: Glu	Anticodon: TTC at 37-39 (766586-766584)	Score: 58.23
Seq: GTCCCTATCGTCTAGTCaGGTccAGGACACCGCCCTTTCACGGCGGCAACAGGGGTTCGAATCCCCTTGGGGACGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna56 (763192-763115)	Length: 78 bp
Type: Glu	Anticodon: TTC at 37-39 (763156-763154)	Score: 59.52
Seq: GTCCTCATCGTCTAGTCaGGTctAGGACACCGCCCTTTCACGGCGGCAACAGGGGTTCGAATCCCCTTGGGGACGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna46 (1483010-1482936)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (1482978-1482976)	Score: 73.41
Seq: GCGGGAGTAACTCAGTGGTAGAGTGCAACCTTGCCAAGGTTGACGtCGCGAGTCCGAATCTCGTCTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna60 (671952-671878)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (671920-671918)	Score: 73.41
Seq: GCGGGAGTAACTCAGTGGTAGAGTGCAACCTTGCCAAGGTTGACGtCGCGAGTCCGAATCTCGTCTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna9 (1254007-1254082)	Length: 76 bp
Type: Gly	Anticodon: TCC at 34-36 (1254040-1254042)	Score: 86.33
Seq: GCGGGAATAGCTCAATTGGTAGAGCATCAGCCTTCCAAGCTGAGGGtTGCGAGTCCGAGTCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna38 (2607832-2607756)	Length: 77 bp
Type: His	Anticodon: GTG at 35-37 (2607798-2607796)	Score: 85.72
Seq: GTGGGCGTGGCTCAATTGGTtAGAGCACCTGGTTGTGACCCAGGAAGtCGGGGGTTCGAGTCCCCTCGCTCACCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna17 (2426698-2426774)	Length: 77 bp
Type: His	Anticodon: GTG at 35-37 (2426732-2426734)	Score: 87.64
Seq: GTGGGCGTGGCTCAGTTGGTtAGAGCACCTGGTTGTGACCCAGGAAGtCGGGGGTTCGAGTCCCCTCGCTCACCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna4 (807931-808007)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (807965-807967)	Score: 100.93
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCAAATCCACCTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna47 (1462154-1462078)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (1462120-1462118)	Score: 100.93
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCAAATCCACCTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna61 (455538-455452)	Length: 87 bp
Type: Leu	Anticodon: CAA at 35-37 (455504-455502)	Score: 73.76
Seq: GCCGGAGTGGTGAAATAGGTaGACGCACGGGATTCAAAATCCCGCGGGGGTAACCCCGTGTCGGTTCGATTCCGACCTCCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna50 (1236485-1236399)	Length: 87 bp
Type: Leu	Anticodon: CAG at 35-37 (1236451-1236449)	Score: 67.26
Seq: GCCGAAGTGGCGGAATTGGTaGACGCGCTAGGTTCAGGGTCTAGTGGGGGTAACCCCGTGGAAGTTCGAGTCTTCTCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna63 (109530-109446)	Length: 85 bp
Type: Leu	Anticodon: GAG at 35-37 (109496-109494)	Score: 58.20
Seq: GCCGAAGTGGTGGAATTGGTaGACGCGCACGATTGAGGGTCGTGTGGGGCAACCCATGTCGGTTCGACCCCGACCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna64 (109206-109122)	Length: 85 bp
Type: Leu	Anticodon: GAG at 35-37 (109172-109170)	Score: 58.20
Seq: GCCGAAGTGGTGGAATTGGTaGACGCGCACGATTGAGGGTCGTGTGGGGCAACCCATGTCGGTTCGACCCCGACCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna43 (1787980-1787894)	Length: 87 bp
Type: Leu	Anticodon: TAA at 35-37 (1787946-1787944)	Score: 66.58
Seq: GCCTGGATGGTGGAACTGGTaGACACCCGAGACTTAAAATCTCGTGGGCTTCGGCCCGTGCGAGTTCGATTCTCGCTCTAGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna14 (1791402-1791486)	Length: 85 bp
Type: Leu	Anticodon: TAG at 35-37 (1791436-1791438)	Score: 71.50
Seq: GCGAGGGTGGCGGAACTGGTaGACGCACCAGACTTAGGATCTGGCGCCTTACGGTGTGGGGGTTCGACTCCCCCCTCTCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna53 (766714-766639)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (766681-766679)	Score: 87.14
Seq: GGGGCGTTAACTCAGCTGGTAGAGTATCTGACTTTTAATCAGAGAGtCGCGCGTTCGAGCCGCGCACGCCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna55 (763275-763200)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (763242-763240)	Score: 87.14
Seq: GGGGCGTTAACTCAGCTGGTAGAGTATCTGACTTTTAATCAGAGAGtCGCGCGTTCGAGCCGCGCACGCCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna15 (2106124-2106200)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (2106158-2106160)	Score: 86.53
Seq: CGCGGGGTGGAGCAGTTtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTTGGTTCAAATCCAGCCCCCGCTACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
                    
chr.trna41 (1947022-1946946)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1946988-1946986)	Score: 86.53
Seq: CGCGGGGTGGAGCAGTTtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTTGGTTCAAATCCAGCCCCCGCTACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
                    
chr.trna42 (1946920-1946844)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1946886-1946884)	Score: 86.53
Seq: CGCGGGGTGGAGCAGTTtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTTGGTTCAAATCCAGCCCCCGCTACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
                    
chr.trna62 (204950-204874)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (204916-204914)	Score: 87.19
Seq: GGCGATGTAGCTCAGTCGGTtAGAGCATACGGCTCATATCCGTAGTGtCCGGGGTTCGATTCCCTGTATCGCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna59 (694797-694721)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (694763-694761)	Score: 94.61
Seq: GGGCGCATAGCTCAGTTGGTcAGAGCCACCGGCTCATAACCGGTCGGtCGTAGGTTCGAATCCTACTGCGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna39 (2024869-2024794)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (2024836-2024834)	Score: 90.13
Seq: GCCGGGATAGCTCAGTCGGTAGAGCAACGGACTGAAAATCCGTGTGtCCCTGGTTCGATTCCTGGTCCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....
                    
chr.trna40 (2009564-2009489)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (2009531-2009529)	Score: 90.13
Seq: GCCGGGATAGCTCAGTCGGTAGAGCAACGGACTGAAAATCCGTGTGtCCCTGGTTCGATTCCTGGTCCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....
                    
chr.trna45 (1586641-1586564)	Length: 78 bp
Type: Pro	Anticodon: GGG at 36-38 (1586606-1586604)	Score: 77.59
Seq: CGGAATGTAGCGCAGCCtGGTtAGCGCACTTGTCTGGGGGACAAGGGGcCGGAGGTTCGAATCCTCTCATTCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna58 (721311-721234)	Length: 78 bp
Type: Pro	Anticodon: TGG at 36-38 (721276-721274)	Score: 90.80
Seq: CGGGGCGTAGCGCAGCCtGGTtAGCGCGCCTGCCTTGGGAGCAGGAGGcCGTAGGTTCGAATCCTACCGCCCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna1 (363837-363930)	Length: 94 bp
Type: SeC(p)	Anticodon: TCA at 36-38 (363872-363874)	Score: 28.39
Seq: GGAAGTGGACGGAGCaCTGGTGGCTCCCCCGGATTTCAAATCCGGTGTAACGGGTTAATAGCTCGTTAGGTGGGTTCGATTCCCATGCACTTCC
Str: >>>>>>>...>>>>>.>....<<<<<<.>>>>>.......<<<<<....>..>>.>....<.<<..<..>>>>>.......<<<<<.<<<<<<<
                    
chr.trna3 (785913-786004)	Length: 92 bp
Type: Ser	Anticodon: GCT at 35-37 (785947-785949)	Score: 55.10
Seq: GGAGGGGTGACCGAGAGGCcgATGGTGCTCGCCTGCTAAGCGAGTGTGGGGGTCAGACTCCACCGAGGGTTCGAATCCCTCCTCCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<<<<<<<<....
                    
chr.trna13 (1606558-1606643)	Length: 86 bp
Type: Ser	Anticodon: GGA at 35-37 (1606592-1606594)	Score: 61.30
Seq: GGAGAGGTGACCGAGTGGCttAAGGTGCACGCCTGGAAAGCGTGTGTACGCAAGTACCGAGAGTTCGAATCTCTCCTTTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<.>>>>>.......<<<<<<<<<<<<....
                    
chr.trna2 (785819-785904)	Length: 86 bp
Type: Ser	Anticodon: TGA at 35-37 (785853-785855)	Score: 74.62
Seq: GGAGGAATGGCCGAGTGGTtgAAGGCGGCGGTCTTGAAAACCGTTGTACGAAAGTACCGTGGGTTCGAATCCTACTTCCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<.>>>>>.......<<<<<<<<<<<<....
                    
chr.trna16 (2262518-2262593)	Length: 76 bp
Type: Thr	Anticodon: CGT at 34-36 (2262551-2262553)	Score: 84.06
Seq: GCCAACATAGCTCAGTTGGTAGAGCGACGCTCTCGTAAAGCGTAGGcCAGCGGTTCGATCCCGCTTGTTGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna10 (1254102-1254177)	Length: 76 bp
Type: Thr	Anticodon: GGT at 34-36 (1254135-1254137)	Score: 92.27
Seq: GCCCACATAGCTCAGTTGGTAGAGCGCATCCTTGGTAAGGATGAGGtCACCGGTTCAACTCCGGTTGTGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna21 (3358582-3358657)	Length: 76 bp
Type: Thr	Anticodon: GGT at 34-36 (3358615-3358617)	Score: 93.39
Seq: GCCCACATAGCTCAGTTGGTAGAGCGCATCCTTGGTAAGGATGAGGtCACCGGTTCGACTCCGGTTGTGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna7 (1253753-1253828)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (1253786-1253788)	Score: 83.47
Seq: GCTGGCGTAGCTCAACTGGAAGAGCAGCTGATTTGTAATCAGCAGGtTGCGGGTTCAAGTCCCATCGCCAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
                    
chr.trna11 (1255658-1255734)	Length: 77 bp
Type: Trp	Anticodon: CCA at 35-37 (1255692-1255694)	Score: 76.45
Seq: AGGCCAGTAGCTCtAATTGGTAGAGCGCCGGATTCCAAATCCGGATGcTGGGGGTTCGAGTCCCTCCTGGCCTGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna20 (3358386-3358470)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (3358420-3358422)	Score: 77.12
Seq: GGAGGGGTTCCCGAGTGGTtaAAGGGATCAGACTGTAAATCTGACGGCTCAGCCTtCGAAGGTTCGAATCCTTCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna8 (1253904-1253988)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (1253938-1253940)	Score: 77.12
Seq: GGAGGGGTTCCCGAGTGGTtaAAGGGATCAGACTGTAAATCTGACGGCTCAGCCTtCGAAGGTTCGAATCCTTCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna44 (1594939-1594865)	Length: 75 bp
Type: Val	Anticodon: GAC at 33-35 (1594907-1594905)	Score: 80.94
Seq: AGGCGCGTAGCTCAGTGGGAGAGCGCCACCTTGACGTGGTGGATGtCGGCGGTTCAATCCCGCCCGCGCCTACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna26 (2889552-2889477)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (2889519-2889517)	Score: 93.49
Seq: GGGCGACTAGCTCAGCTGGGAGAGCATCGGCCTTACAAGCCGAGGGtCACAGGTTCAAGCCCTGTGTCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna28 (2889322-2889247)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (2889289-2889287)	Score: 93.49
Seq: GGGCGACTAGCTCAGCTGGGAGAGCATCGGCCTTACAAGCCGAGGGtCACAGGTTCAAGCCCTGTGTCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna30 (2889095-2889020)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (2889062-2889060)	Score: 93.49
Seq: GGGCGACTAGCTCAGCTGGGAGAGCATCGGCCTTACAAGCCGAGGGtCACAGGTTCAAGCCCTGTGTCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna32 (2888869-2888794)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (2888836-2888834)	Score: 93.49
Seq: GGGCGACTAGCTCAGCTGGGAGAGCATCGGCCTTACAAGCCGAGGGtCACAGGTTCAAGCCCTGTGTCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna34 (2888642-2888567)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (2888609-2888607)	Score: 93.49
Seq: GGGCGACTAGCTCAGCTGGGAGAGCATCGGCCTTACAAGCCGAGGGtCACAGGTTCAAGCCCTGTGTCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna36 (2888414-2888339)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (2888381-2888379)	Score: 93.49
Seq: GGGCGACTAGCTCAGCTGGGAGAGCATCGGCCTTACAAGCCGAGGGtCACAGGTTCAAGCCCTGTGTCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
         



The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.