GtRNAdb

tRNAscan-SE Analysis of Desulfovibrio vulgaris Hildenborough

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 19895 19970 Ala GGC tcttccgcaa gacgttcacc0 0 86.96 67.1919.77 Both
chr 2 30047 30122 Ala GGC cacctcgctt gagattttct0 0 86.96 67.1919.77 Both
chr 3 107515 107591 Ile GAT cagagccgac cgtcaggcga0 0 94.70 71.8222.88 Both
chr 4 107614 107689 Ala TGC cgcaccaagt tttggtggac0 0 93.18 76.5016.68 Both
chr 5 296511 296587 Ile GAT cagagccgac cgtcaggcga0 0 94.70 71.8222.88 Both
chr 6 296610 296685 Ala TGC cgcaccaagt tttggtggac0 0 93.18 76.5016.68 Both
chr 7 318835 318910 Val CAC gcctcctcaa cgcggagccg0 0 89.80 73.5216.28 Both
chr 8 318914 318990 Asp GTC cccaccacgc tgtccccaag0 0 84.72 64.1620.56 Both
chr 9 319062 319138 Asp GTC ctcttcatgc tttttcgaca0 0 84.81 64.1020.71 Both
chr 10 417073 417149 Met CAT cggaacatgt gaatcgcaag0 0 83.17 58.6824.49 Both
chr 11 709268 709344 Glu TTC tgtgctgggt aacgcaagaa0 0 66.39 36.9529.44 Both
chr 12 775707 775798 Ser TGA gggcagatgc gaacgatgtt0 0 67.95 37.3330.62 Both
chr 13 1203891 1203966 Thr CGT ctcctcgaat gagatttcaa0 0 88.64 62.7225.92 Both
chr 14 1409622 1409706 Leu TAG ccccgtgtgc gctacagggc0 0 71.86 43.7428.12 Both
chr 15 1770704 1770780 Arg CCT aatcaccctc tagaaaacaa0 0 88.33 62.3126.02 Both
chr 16 2069693 2069779 Leu CAA gacggctcat gaatgaaaac0 0 72.18 39.2332.95 Both
chr 17 2163497 2163574 Pro CGG ctctccgcaa gaacataaga0 0 85.31 61.1224.19 Both
chr 18 2250385 2250459 Gly GCC tcctcgctga gcaaatccga0 0 85.83 60.8924.94 Both
chr 19 2250471 2250545 Cys GCA caaatccgat catcggtgcg0 0 78.64 46.9331.71 Both
chr 20 2250553 2250627 Gly GCC ccacatcggt ccgcaacgcc0 0 85.83 60.8924.94 Both
chr 21 2250660 2250734 Gly CCC gacaccgcag agaaatcaag0 0 87.68 63.9723.71 Both
chr 22 2303987 2304061 Gly GCC gtctgaacgt gagaaggcac0 0 85.83 60.8924.94 Both
chr 23 2356165 2356240 Ala CGC cacgcccgat cgcaagcaaa0 0 82.51 67.4215.09 Both
chr 24 2474950 2475025 Asn GTT ggcgccacct gatgatctag0 0 81.86 57.4424.42 Both
chr 25 2493503 2493578 Asn GTT tcggcgacat gaatgattta0 0 81.86 57.4424.42 Both
chr 26 3019037 3019112 Thr TGT atctccgttg tacagtggtg0 0 85.30 69.1716.13 Both
chr 27 3019119 3019204 Tyr GTA tccatacagt cttgacaagc0 0 74.54 39.4535.09 Both
chr 28 3019262 3019338 Gly TCC tacggcatat tccccaatag0 0 88.91 66.7022.21 Both
chr 29 3019375 3019450 Thr GGT gcttgatgtt tatttgcctt0 0 86.35 59.3027.05 Both
chr 30 3020869 3020945 Trp CCA ttcatagtgc tttcccttct0 0 76.66 55.7620.90 Both
chr 31 3061754 3061828 Gln CTG tcctcgctga agcacccccc0 0 62.75 38.9323.82 Both
chr 32 3061846 3061923 Glu TTC cccttattgc ctgaagtcat0 0 59.47 34.3425.13 tRNAscan
chr 33 3163832 3163908 Pro GGG tctcgcacgt ttttgcaaaa0 0 80.67 57.8722.80 Both
chr 34 3433963 3434038 His GTG ctcgcttgtg ttccaagcgt0 0 79.40 62.2617.14 Both
chr 35 3484609 3484533 Arg CCG aggcggttca ctaatggaaa0 0 84.91 60.2224.69 Both
chr 36 3422970 3422895 Phe GAA ccttcgcgac cggaaatcaa0 0 91.09 65.6125.48 Both
chr 37 3287544 3287469 Val TAC atactccctt cgagtacaaa0 0 92.36 73.7018.66 Both
chr 38 3250534 3250458 Ile GAT cagagccgac cgtcaggcga0 0 94.70 71.8222.88 Both
chr 39 3250435 3250360 Ala TGC cgcaccaagt tttggtggac0 0 93.18 76.5016.68 Both
chr 40 2977734 2977658 Arg TCT tcgccttcac agatatttca0 0 85.08 65.8119.27 Both
chr 41 2834706 2834620 Leu GAG cttccccgac ttcggacgca0 0 65.36 31.7033.66 Both
chr 42 2696140 2696064 Ile GAT cagagccgac cgtcaggcga0 0 94.70 71.8222.88 Both
chr 43 2696041 2695966 Ala TGC cgcaccaagt tttggtggac0 0 93.18 76.5016.68 Both
chr 44 2691224 2691138 Leu CAG cctctctcgc tcggaagcaa0 0 61.99 30.1331.86 Both
chr 45 2651339 2651265 Val GAC tcgacggtgt caccgcaaga0 0 77.70 53.6424.06 Both
chr 46 2562741 2562665 Ile GAT cagagccgac cgtcaggcga0 0 94.70 71.8222.88 Both
chr 47 2562642 2562567 Ala TGC cgcaccaagt tttggtggac0 0 93.18 76.5016.68 Both
chr 48 2129238 2129162 Met CAT gtgcagatgt gtaaaatcag0 0 83.17 58.6824.49 Both
chr 49 1755880 1755794 Leu GAG ttgtaacagt atgaaagatg0 0 59.40 31.5827.82 Both
chr 50 1740229 1740153 Met CAT cgacaggttt ctagcaaatg0 0 86.53 64.8521.68 Both
chr 51 1723622 1723546 Pro TGG ttctgccttg tgaaatcaag0 0 91.26 66.6424.62 Both
chr 52 1658353 1658278 Gln TTG tttgtgacgc tttcagaacg0 0 73.71 53.0220.69 Both
chr 53 1648502 1648426 Arg ACG gcttctcgct ttgaaagggc0 0 94.32 73.4720.85 Both
chr 54 1648393 1648317 Arg ACG tatacgacac caaggcgaat0 0 84.77 69.0715.70 Both
chr 55 1648297 1648221 Arg ACG tggcgtgcat cgaaagcaaa0 0 89.92 66.6823.24 Both
chr 56 1596173 1596079 Ser CGA ctccaaaagc tactcactga0 0 78.97 48.4530.52 Both
chr 57 1536198 1536123 Met CAT gtaacggcgt cgaacgcacg0 0 84.60 68.1916.41 Both
chr 58 1369596 1369507 SeC(p) TCA tcctttttct gccaatagca0 0 47.58 0.000.00 Eufind
chr 59 1093696 1093621 Lys CTT cgaacggcac gcttgcaagt0 0 90.63 72.3918.24 Both
chr 60 1093429 1093354 Lys CTT cacgaggcac gaacgagtgc0 0 90.63 72.3918.24 Both
chr 61 911428 911334 Ser GCT catgcattct gaacacgaag0 0 63.71 37.5426.17 Both
chr 62 879067 878976 Ser GGA cgtctcgcac gattatcccc0 0 58.88 22.9635.92 tRNAscan
chr 63 672752 672676 Glu TTC cggttcaagc cagcacgcaa0 0 66.39 36.9529.44 Both
chr 64 514333 514247 Leu CAG tccccctcgc tcggaagcaa0 0 61.99 30.1331.86 Both
chr 65 407127 407052 Thr GGT gtcgcacgac tgaatagaaa0 0 88.87 62.3626.51 Both
chr 66 270607 270532 Lys TTT aacctttcgg tgatattaca0 0 88.53 68.3520.18 Both
chr 67 233215 233143 Pseudo TTT gcgacgatac atgataacag0 0 22.50 31.06-8.56 Eufind
chr 68 189812 189726 Leu TAA accgcttcgt tacaaaccag0 0 67.67 35.3432.33 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.