GtRNAdb

tRNAscan-SE Analysis of Desulfovibrio vulgaris Hildenborough

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> UCSC Genome Browser
>> Genome DB
>> Genome Seq
Predicted tRNA Secondary Structures


Click on "View tRNA" buttons to view 2-D tRNA structures

Cove-predicted tRNA secondary structures rendered by NAVIEW (c) 1988 Robert E. Bruccoleri


chr.trna23 (2356165-2356240)	Length: 76 bp
Type: Ala	Anticodon: CGC at 34-36 (2356198-2356200)	Score: 82.51
Seq: GGGGATGTAGCTCAGCTGGGAGAGCGCAGCGTTCGCAATGCTGAAGtCAGGGGTTCAATCCCCCTCATCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna1 (19895-19970)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (19928-19930)	Score: 86.96
Seq: GGGGCTGTAGCTCAGTTGGGAGAGCGCTTGAATGGCATTCAAGAGGtCAGGAGTTCAATTCTCCTCAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna2 (30047-30122)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (30080-30082)	Score: 86.96
Seq: GGGGCTGTAGCTCAGTTGGGAGAGCGCTTGAATGGCATTCAAGAGGtCAGGAGTTCAATTCTCCTCAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna39 (3250435-3250360)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (3250402-3250400)	Score: 93.18
Seq: GGGGGCGTAGCTCAGCTGGGAGAGCACCTGCCTTGCACGCAGGGGGtCAACGGTTCAATCCCGTTCGCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna4 (107614-107689)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (107647-107649)	Score: 93.18
Seq: GGGGGCGTAGCTCAGCTGGGAGAGCACCTGCCTTGCACGCAGGGGGtCAACGGTTCAATCCCGTTCGCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna43 (2696041-2695966)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (2696008-2696006)	Score: 93.18
Seq: GGGGGCGTAGCTCAGCTGGGAGAGCACCTGCCTTGCACGCAGGGGGtCAACGGTTCAATCCCGTTCGCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna47 (2562642-2562567)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (2562609-2562607)	Score: 93.18
Seq: GGGGGCGTAGCTCAGCTGGGAGAGCACCTGCCTTGCACGCAGGGGGtCAACGGTTCAATCCCGTTCGCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna6 (296610-296685)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (296643-296645)	Score: 93.18
Seq: GGGGGCGTAGCTCAGCTGGGAGAGCACCTGCCTTGCACGCAGGGGGtCAACGGTTCAATCCCGTTCGCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna54 (1648393-1648317)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (1648359-1648357)	Score: 84.77
Seq: GCGCCGGTAGCCCAGCTGGAtAGAGCAACAGGCTACGAACCTGTAGGtCGGAGGTTCGAATCCTTCCCGGCGCGCCA
Str: >>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna55 (1648297-1648221)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (1648263-1648261)	Score: 89.92
Seq: GCGCTGGTAGCTCAGTTGGAtAGAGCAACAGGCTACGAACCTGTAGGtCGGAGGTTCGAATCCTTCCCAGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna53 (1648502-1648426)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (1648468-1648466)	Score: 94.32
Seq: GCGCCGGTAGCTCAGTTGGAtAGAGCAACAGGCTACGAACCTGTAGGtCGGAGGTTCGAATCCTTCCCGGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna35 (3484609-3484533)	Length: 77 bp
Type: Arg	Anticodon: CCG at 35-37 (3484575-3484573)	Score: 84.91
Seq: GGGCAATTAGCTCAGATGGAtAGAGCGTTGGCCTCCGGAGCCAAAGGcCGCAAGTTCGAATCTTGCATTGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna15 (1770704-1770780)	Length: 77 bp
Type: Arg	Anticodon: CCT at 35-37 (1770738-1770740)	Score: 88.33
Seq: GCGCCTGTAGCTCAGTTGGAtAGAGCGAGCGCCTCCTAAGCGCTAGGcCACAAGTTCGATTCTTGTCAGGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna40 (2977734-2977658)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (2977700-2977698)	Score: 85.08
Seq: GCGCCCGTAGCTCAGTTGGAaAGAGCAGGAGCCTTCTAAGCTCTTGGcCGGGGGTTCGAATCCTCCCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna24 (2474950-2475025)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (2474983-2474985)	Score: 81.86
Seq: TCCCCGGTGGCTCAATCGGCAGAGCGGGTGACTGTTAATCACTAGGtTGGCGGTTCAAGTCCGTCCCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna25 (2493503-2493578)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (2493536-2493538)	Score: 81.86
Seq: TCCCCGGTGGCTCAATCGGCAGAGCGGGTGACTGTTAATCACTAGGtTGGCGGTTCAAGTCCGTCCCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna8 (318914-318990)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (318948-318950)	Score: 84.72
Seq: GGAGCCGTAGTTAAGACGGTtATAACGCCGGCCTGTCACGCCGGAGGcCGAGGGTTCGAGTCCCTTCGGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna9 (319062-319138)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (319096-319098)	Score: 84.81
Seq: GGAGCGGTAGTTAAGACGGTtATAACGCCGGCCTGTCACGCCGGAGGcCGAGGGTTCGAGTCCCTTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna19 (2250471-2250545)	Length: 75 bp
Type: Cys	Anticodon: GCA at 33-35 (2250503-2250505)	Score: 78.64
Seq: GGCGGCGTAGCCAAGTGGTAAGGCAGAGGTCTGCAAAACCTCCATtCTCCGGTTCAAATCCGGACGCCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna31 (3061754-3061828)	Length: 75 bp
Type: Gln	Anticodon: CTG at 34-36 (3061787-3061789)	Score: 62.75
Seq: TGGGCTGTCGTTCAATTGGCAGGACGACGGATTCTGGCTCCGTTAATCTAGGTTCGAGTCCTAGCAGCCCAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna52 (1658353-1658278)	Length: 76 bp
Type: Gln	Anticodon: TTG at 34-36 (1658320-1658318)	Score: 73.71
Seq: TGGGGTGTCGCCAAGTTGGTAAGGCAACGGGTTTTGGTCCCGTCATtCGAGGGTTCGAGTCCTTCCGCCCCAGCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna32 (3061846-3061923)	Length: 78 bp
Type: Glu	Anticodon: TTC at 37-39 (3061882-3061884)	Score: 59.47
Seq: GTCCCTATCGTCTAGCCcGGCccAGGACAACGGCCTTTCACGCCGTCGACAGGGGTTCAAATCCCCTTGGGGACGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna11 (709268-709344)	Length: 77 bp
Type: Glu	Anticodon: TTC at 36-38 (709303-709305)	Score: 66.39
Seq: GTTCCCATCGTCTAGCCGGCctAGGACAACGGCCTTTCACGCCGTCGACAGGGGTTCGAATCCCCTTGGGAACGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna63 (672752-672676)	Length: 77 bp
Type: Glu	Anticodon: TTC at 36-38 (672717-672715)	Score: 66.39
Seq: GTTCCCATCGTCTAGCCGGCctAGGACAACGGCCTTTCACGCCGTCGACAGGGGTTCGAATCCCCTTGGGAACGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna21 (2250660-2250734)	Length: 75 bp
Type: Gly	Anticodon: CCC at 33-35 (2250692-2250694)	Score: 87.68
Seq: GCGGGAATAACTCAGCGGTAGAGTGTCAGCTTCCCAAGCTGAAGGtCGCGGGTTCAAATCCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna18 (2250385-2250459)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (2250417-2250419)	Score: 85.83
Seq: GCGGGAGTAACTCAGTGGTAGAGTGCAACCTTGCCAAGGTTGAAGtCGCGGGTTCAAATCCCGTCTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna20 (2250553-2250627)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (2250585-2250587)	Score: 85.83
Seq: GCGGGAGTAACTCAGTGGTAGAGTGCAACCTTGCCAAGGTTGAAGtCGCGGGTTCAAATCCCGTCTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna22 (2303987-2304061)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (2304019-2304021)	Score: 85.83
Seq: GCGGGAGTAACTCAGTGGTAGAGTGCAACCTTGCCAAGGTTGAAGtCGCGGGTTCAAATCCCGTCTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna28 (3019262-3019338)	Length: 77 bp
Type: Gly	Anticodon: TCC at 35-37 (3019296-3019298)	Score: 88.91
Seq: GCGGGAATAGCTCAAGTGGCtAGAGCATCAGCCTTCCAAGCTGAGGGtTGCGAGTTCGAGTCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna34 (3433963-3434038)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (3433996-3433998)	Score: 79.40
Seq: GCGGATGTAGCTCAGCAGGTAGAGCACCTGGTTGTGGCCCAGGTGGcCGTGGGTTCAAGTCCCATCATTCGCCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna3 (107515-107591)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (107549-107551)	Score: 94.70
Seq: GGGCCTGTAGCTCAGGTGGCtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna38 (3250534-3250458)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (3250500-3250498)	Score: 94.70
Seq: GGGCCTGTAGCTCAGGTGGCtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna42 (2696140-2696064)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (2696106-2696104)	Score: 94.70
Seq: GGGCCTGTAGCTCAGGTGGCtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna46 (2562741-2562665)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (2562707-2562705)	Score: 94.70
Seq: GGGCCTGTAGCTCAGGTGGCtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna5 (296511-296587)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (296545-296547)	Score: 94.70
Seq: GGGCCTGTAGCTCAGGTGGCtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna16 (2069693-2069779)	Length: 87 bp
Type: Leu	Anticodon: CAA at 35-37 (2069727-2069729)	Score: 72.18
Seq: GCCGGAATGGTGGAATTGGTaGACGCAGCGGACTCAAAATCCGCCGGTGGCAACACCtTGTCAGTTCGAGTCTGACTTCCGGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna44 (2691224-2691138)	Length: 87 bp
Type: Leu	Anticodon: CAG at 35-37 (2691190-2691188)	Score: 61.99
Seq: GCCGAAGTGGTGGAATTGGTaGACACGCTAGGTTCAGGGTCTAGTTGGGGTTCCCCAGTGGGAGTTCGAGTCTCCCCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>..<<<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna64 (514333-514247)	Length: 87 bp
Type: Leu	Anticodon: CAG at 35-37 (514299-514297)	Score: 61.99
Seq: GCCGAAGTGGTGGAATTGGTaGACACGCTAGGTTCAGGGTCTAGTTGGGGTTCCCCAGTGGGAGTTCGAGTCTCCCCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>..<<<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna49 (1755880-1755794)	Length: 87 bp
Type: Leu	Anticodon: GAG at 35-37 (1755846-1755844)	Score: 59.40
Seq: GCCGAGGTGGTGGAATTGGTaGACACGCTATCTTGAGGGGGTAGTGGGAGAAATCCCGTGAGGGTTCGAGTCCCTCCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna41 (2834706-2834620)	Length: 87 bp
Type: Leu	Anticodon: GAG at 35-37 (2834672-2834670)	Score: 65.36
Seq: GCCGAGGTGGTGGAATTGGTaGACACGCTATCTTGAGGGGGTAGTGGGAGAAATCCCGTGAGGGTTCGAGTCCCTCCCTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna68 (189812-189726)	Length: 87 bp
Type: Leu	Anticodon: TAA at 35-37 (189778-189776)	Score: 67.67
Seq: GCCCGGATGGCGGAACTGGCaGACGCAAGGGACTTAAAATCCCTCGGCCTTCGGGCTGTACGAGTTCAATCCTCGTTCCGGGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna14 (1409622-1409706)	Length: 85 bp
Type: Leu	Anticodon: TAG at 35-37 (1409656-1409658)	Score: 71.86
Seq: GCGAGAGTGGCGGAATAGGTaGACGCACTGGACTTAGAATCCAGCGCCTTTGTGCGTGGGAGTTCGAGTCTCCCCTCTCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>......<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna59 (1093696-1093621)	Length: 76 bp
Type: Lys	Anticodon: CTT at 34-36 (1093663-1093661)	Score: 90.63
Seq: GGGTCATTAGCTCAATTGGTAGAGCAGCTGACTCTTAATCAGTTGGtTCGGGGTTCGAGTCCCTGATGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna60 (1093429-1093354)	Length: 76 bp
Type: Lys	Anticodon: CTT at 34-36 (1093396-1093394)	Score: 90.63
Seq: GGGTCATTAGCTCAATTGGTAGAGCAGCTGACTCTTAATCAGTTGGtTCGGGGTTCGAGTCCCTGATGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna66 (270607-270532)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (270574-270572)	Score: 88.53
Seq: GGGTCGTTAACTCAGTCGGTAGAGTACCTGCCTTTTAAGCAGAGAGtCGCAGGTTCGAATCCTGCACGACCCACCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
                    
chr.trna10 (417073-417149)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (417107-417109)	Score: 83.17
Seq: CGCGGGGTGGAGCAGCAcGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
                    
chr.trna48 (2129238-2129162)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (2129204-2129202)	Score: 83.17
Seq: CGCGGGGTGGAGCAGCAcGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
                    
chr.trna57 (1536198-1536123)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (1536165-1536163)	Score: 84.60
Seq: GGGCCCATAGCTCAATTGGCAGAGCCCTCGGCTCATAACCGATTTGtTGCAGGTTCGAGTCCTGCTGGGCCCACCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
                    
chr.trna50 (1740229-1740153)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1740195-1740193)	Score: 86.53
Seq: GGCGAGGTAGCTCAGTTGGTcAGAGCATGCGGCTCATATCCGCAGTGtCGGGGGTTCAATTCCCTCCCTCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna36 (3422970-3422895)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (3422937-3422935)	Score: 91.09
Seq: GCCGAGGTAGCTCAGTTGGTAGAGCAGGGGACTGAAAATCCCCGTGtCGGGAGTTCAATTCTCTCCCTCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna17 (2163497-2163574)	Length: 78 bp
Type: Pro	Anticodon: CGG at 36-38 (2163532-2163534)	Score: 85.31
Seq: CGGGATGTGGCTCAGTTtGGCtAGAGCGCAGCGTTCGGGACGCTGAGGcCGGAGGTTCGAATCCTCTCATCCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna33 (3163832-3163908)	Length: 77 bp
Type: Pro	Anticodon: GGG at 35-37 (3163866-3163868)	Score: 80.67
Seq: CGGGATGTAGCGCAGCCtGGGAGCGCACTTGAATGGGGTTCAAGGGGtCGAAGGTTCAAATCCTTTCATCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna51 (1723622-1723546)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (1723588-1723586)	Score: 91.26
Seq: CGGAACGTAGCGCAGCCtGGTAGCGCACCTGCCTTGGGAGCAGGGGGtCGCTGGTTCGAATCCAGTCGTTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna67 (233215-233143)	Length: 73 bp
Type: Lys	Anticodon: TTT at 31-33 (233185-233183)	Score: 22.50
Seq: GTTACTTTACCGTGTTcATCGCGTGGGCCTTTTAAGCAGAGAGtCGCAGGTTCGAATCCTGCACGACCCACCA
Str: >...>.>...>>.......<<..>..>>.......<<..<.....>>>>>.......<<<<<<.<...<....
                    
chr.trna58 (1369596-1369507)	Length: 90 bp
Type: SeC(p)	Anticodon: TCA at 35-37 (1369562-1369560)	Score: 47.58
Seq: GGAAGCGTTTTCTATCCGGTGATAGGCCCGGTCTTCAAAACCGGTGGTAGGTCGAGAGGTCTACGGTAGGTTCGACTCCTATACGCTTCC
Str: >>>>>>>>..>>>>>>....<<<<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<.>>>>>.......<<<<<<<<<<<<<
                    
chr.trna56 (1596173-1596079)	Length: 95 bp
Type: Ser	Anticodon: CGA at 37-39 (1596137-1596135)	Score: 78.97
Seq: GGAGAGGTAGCGAAGCTGGCcgtAACGCGCTCGACTCGAAATCGAGTTACGGGTTAATaGCCCGTACGTGGGTTCGAATCCCACCCTCTCCGCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<<<<<<<<....
                    
chr.trna61 (911428-911334)	Length: 95 bp
Type: Ser	Anticodon: GCT at 36-38 (911393-911391)	Score: 63.71
Seq: GGAGAGGTGTCCGAGTCGGCcgAAGGAGCTCGCCTGCTAAGCGGGTATAGGGGcATAAaCCTCTATCGAGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>>......<<<<<<<.>>>>>.......<<<<<<<<<<<<....
                    
chr.trna62 (879067-878976)	Length: 92 bp
Type: Ser	Anticodon: GGA at 36-38 (879032-879030)	Score: 58.88
Seq: GGAGAGGTGTCCGAGATGGCcgAAGGAGCACGATTGGAAATCGTGTGTACCCTAACCCGGTACCGAGAGTTCGAATCTCTCCCTCTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>.......<<<<<.>>>>>.......<<<<<<<<<<<<....
                    
chr.trna12 (775707-775798)	Length: 92 bp
Type: Ser	Anticodon: TGA at 37-39 (775743-775745)	Score: 67.95
Seq: GGAAGGGTGGCAGAGTCcGGTttATTGCGGCGGTCTTGAAAACCGTTGTGGGGGGAACCCCACCGGGGGTTCGAATCCCTCCCCTTCCGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
                    
chr.trna13 (1203891-1203966)	Length: 76 bp
Type: Thr	Anticodon: CGT at 34-36 (1203924-1203926)	Score: 88.64
Seq: GCCAGCTTAGCTCAGATGGTAGAGCAACTGATTCGTAATCAGTAGGtCGGGAGTTCAATTCTCCCAGCTGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna29 (3019375-3019450)	Length: 76 bp
Type: Thr	Anticodon: GGT at 34-36 (3019408-3019410)	Score: 86.35
Seq: GCCCACATAGCTCAGGCGGTAGAGCACTTCCTTGGTAAGGAAGAGGtCATGAGTTCAAGTCTCATTGTGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna65 (407127-407052)	Length: 76 bp
Type: Thr	Anticodon: GGT at 34-36 (407094-407092)	Score: 88.87
Seq: GCCCATGTGGCTCAGTCGGTAGAGCACATCCTTGGTAAGGATGAGGtCAGCAGTTCAATTCTGCTCATGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna26 (3019037-3019112)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (3019070-3019072)	Score: 85.30
Seq: GCTGGCGTAGCTCAACTGGCAGAGCAGCTGATTTGTAATCAGCCGGtTGCGGGTTCGAGTCCCATCGCCAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
                    
chr.trna30 (3020869-3020945)	Length: 77 bp
Type: Trp	Anticodon: CCA at 35-37 (3020903-3020905)	Score: 76.66
Seq: AGGGCAGTAGCTCTAACGGCtAGAGCGCCGGTCTCCAAAACCGGATGtTGGGGGTTCGAATCCCTCCTGCCCTGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna27 (3019119-3019204)	Length: 86 bp
Type: Tyr	Anticodon: GTA at 35-37 (3019153-3019155)	Score: 74.54
Seq: GGTGGGGTTCCCGAGTGGCcaAAGGGAACAGACTGTAAATCTGTCGTCGTAAGACTtCGGTGGTTCAAATCCACCCCCCACCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna7 (318835-318910)	Length: 76 bp
Type: Val	Anticodon: CAC at 34-36 (318868-318870)	Score: 89.80
Seq: GGGCAGTTAGCTCAGCTGGAAGAGCACCGCCTTCACACGGCGGGGGtCGCAGGTTCGAGCCCTGCACCGCCCACCA
Str: >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<....
                    
chr.trna45 (2651339-2651265)	Length: 75 bp
Type: Val	Anticodon: GAC at 33-35 (2651307-2651305)	Score: 77.70
Seq: AGGCGCGTAGCTCAGGGGGAGAGCACTTCCTTGACACGGAAGGGGtCAGCAGTTCAAATCTGCTCGTGCCTACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna37 (3287544-3287469)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (3287511-3287509)	Score: 92.36
Seq: GGGCGGTTAGCTCAGCTGGTAGAGCGTCGGCCTTACAAGCCGAATGcCGGGGGTTCGATCCCCTCACCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
         



The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.