GtRNAdb

tRNAscan-SE Analysis of Drosophila melanogaster (Release 5 Apr 2006)

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA298
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
1
Predicted pseudogenes4
Total tRNAs304


Intron Summary

tRNAs with introns
15
Leu
CAA
4
Ile
TAT
2
Tyr
GTA
9


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
12
GGC
 
CGC
3
TGC
2
17
GlyACC
 
GCC
14
CCC
 
TCC
6
20
ProAGG
7
GGG
 
CGG
5
TGG
5
17
ThrAGT
9
GGT
 
CGT
3
TGT
6
18
ValAAC
6
GAC
 
CAC
7
TAC
2
15

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
8
GGA
 
CGA
4
TGA
2
ACT
 
GCT
6
 
 
 
 
20
ArgACG
10
GCG
 
CCG
 
TCG
10
 
 
 
 
CCT
3
TCT
3
26
LeuAAG
5
GAG
 
CAG
8
TAG
2
 
 
 
 
CAA
4
TAA
4
23

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
8
 
 
 
 
8
AsnATT
 
GTT
12
 
 
 
 
12
Lys 
 
 
 
CTT
13
TTT
6
19
AspATC
 
GTC
14
 
 
 
 
14
Glu 
 
 
 
CTC
19
TTC
6
25
HisATG
 
GTG
5
 
 
 
 
5
Gln 
 
 
 
CTG
8
TTG
4
12

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
9
GAT
 
 
 
TAT
2
11
Met 
 
 
 
CAT
12
 
 
12
TyrATA
 
GTA
9
 
 
 
 
9
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
7
 
 
 
 
7
Trp 
 
 
 
CCA
8
 
 
8
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.