GtRNAdb

tRNAscan-SE Analysis of Danio rerio (Zebrafish) (Zv7 Jul 2007)

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA12752
Selenocysteine tRNAs (TCA)14
Possible suppressor tRNAs (CTA,TTA)16
tRNAs with undetermined
or unknown isotypes
20
Predicted pseudogenes0
Total tRNAs12802


Intron Summary

tRNAs with introns
823
Ala
TGC
1
Gly
CCC
4
Gly
TCC
2
Pro
AGG
8
Val
AAC
1
Arg
TCT
247
Leu
AAG
4
Leu
TAG
5
Leu
CAA
184
Leu
TAA
5
Phe
AAA
1
Lys
TTT
3
Asp
GTC
1
Ile
AAT
1
Ile
TAT
115
Met
CAT
1
Tyr
ATA
4
Tyr
GTA
236


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
92
GGC
4
CGC
112
TGC
368
576
GlyACC
9
GCC
846
CCC
273
TCC
48
1176
ProAGG
327
GGG
2
CGG
195
TGG
226
750
ThrAGT
369
GGT
10
CGT
73
TGT
305
757
ValAAC
234
GAC
6
CAC
231
TAC
227
698

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
374
GGA
2
CGA
90
TGA
193
ACT
15
GCT
454
 
 
 
 
1128
ArgACG
214
GCG
26
CCG
64
TCG
106
 
 
 
 
CCT
67
TCT
251
728
LeuAAG
301
GAG
3
CAG
307
TAG
271
 
 
 
 
CAA
192
TAA
63
1137

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
10
GAA
210
 
 
 
 
220
AsnATT
24
GTT
1136
 
 
 
 
1160
Lys 
 
 
 
CTT
1012
TTT
557
1569
AspATC
1
GTC
161
 
 
 
 
162
Glu 
 
 
 
CTC
256
TTC
243
499
HisATG
10
GTG
410
 
 
 
 
420
Gln 
 
 
 
CTG
287
TTG
108
395

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
282
GAT
10
 
 
TAT
129
421
Met 
 
 
 
CAT
524
 
 
524
TyrATA
5
GTA
246
 
 
 
 
251
Supres 
 
 
 
CTA
10
TTA
6
16
CysACA
8
GCA
122
 
 
 
 
130
Trp 
 
 
 
CCA
51
 
 
51
SelCys 
 
 
 
 
 
TCA
14
14

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.