GtRNAdb

tRNAscan-SE Analysis of Danio rerio (Zebrafish) (Zv8 Apr 2009)

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA12244
Selenocysteine tRNAs (TCA)14
Possible suppressor tRNAs (CTA,TTA)15
tRNAs with undetermined
or unknown isotypes
19
Predicted pseudogenes0
Total tRNAs12292


Intron Summary

tRNAs with introns
813
Gly
CCC
3
Gly
TCC
2
Pro
AGG
7
Val
AAC
2
Arg
TCT
247
Leu
AAG
4
Leu
TAG
8
Leu
CAA
234
Leu
TAA
8
Phe
AAA
1
Lys
TTT
3
Asp
GTC
1
Ile
AAT
1
Ile
TAT
61
Met
CAT
2
Tyr
ATA
4
Tyr
GTA
225


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
92
GGC
4
CGC
112
TGC
368
576
GlyACC
11
GCC
836
CCC
268
TCC
47
1162
ProAGG
315
GGG
2
CGG
180
TGG
205
702
ThrAGT
359
GGT
10
CGT
66
TGT
290
725
ValAAC
232
GAC
6
CAC
227
TAC
230
695

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
336
GGA
2
CGA
80
TGA
209
ACT
14
GCT
424
 
 
 
 
1065
ArgACG
203
GCG
24
CCG
59
TCG
107
 
 
 
 
CCT
104
TCT
252
749
LeuAAG
270
GAG
4
CAG
300
TAG
244
 
 
 
 
CAA
241
TAA
73
1132

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
10
GAA
197
 
 
 
 
207
AsnATT
24
GTT
1045
 
 
 
 
1069
Lys 
 
 
 
CTT
953
TTT
525
1478
AspATC
1
GTC
150
 
 
 
 
151
Glu 
 
 
 
CTC
245
TTC
225
470
HisATG
10
GTG
387
 
 
 
 
397
Gln 
 
 
 
CTG
266
TTG
105
371

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
258
GAT
10
 
 
TAT
75
343
Met 
 
 
 
CAT
522
 
 
522
TyrATA
5
GTA
236
 
 
 
 
241
Supres 
 
 
 
CTA
9
TTA
6
15
CysACA
9
GCA
136
 
 
 
 
145
Trp 
 
 
 
CCA
44
 
 
44
SelCys 
 
 
 
 
 
TCA
14
14

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.