GtRNAdb

tRNAscan-SE Analysis of Encephalitozoon cuniculi

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGGGAGTTAGCTCAGCGGTA.GAGCGCTTGCTTAGCATGTAAGAG...........GtCATGGGTTCAAATCCCATATTCTCCA chrVII.trna3-AlaAGC Sc: 71.92 >>>>>>>...>>>........<<<..>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGGGGATTATCTTAGTGGTA.GAGTGTTTGCTTCGCATGCAAGTG...........G.CCCGGGTTCGATTCCTGGATCCTCCA chrX.trna3-AlaCGC Sc: 62.98 >>>>>>>..>>>..........<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<. GGGGTTGTGGTCTAGTGGTA.TGATACCTGCTTTGCACGCAGTTG...........G.CCCGGGTTCGATTCCTGGCAACTCCA chrII.trna4-AlaTGC Sc: 64.13

Arg tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCCTCATAGCTCAAT.GGTtA.GAGTGTCGGCCTACGGAGCCGAAG...........GcTGAGGGTTCGAGTCCCTCTGGGGTCG chrVI.trna2-ArgACG Sc: 74.98 >>>>>>>..>>.>..........<.<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<. GGGTCCTTAGTATAAT.GGT.A.GAACACTTGGCTTCGGACCAAATA...........G.TCCGGGTTCGAATCCCGGAGGACTCG chrVII.trna1-ArgTCG Sc: 59.32 >>>>>.>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<.<<<<<. GTTCCTGTAGCTCAGTCGGT.A.GAGCGCGGCTCTCCTAAAGCTGAG...........GtCGTGGGTTCAAGTCCCACCTGGAACG chrIX.trna1-ArgCCT Sc: 75.43 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCTGATAGCGTAAT.GGCtA.ACGCGTCTGCCTTCTAAGCAGAAG...........AcTGCGGGTTCGAGTCCCGCTCAGGGTG chrVIII.trna6-ArgTCT Sc: 71.33

Asn tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCCTCTGTAGCGCAGTGGTtA.ACGCGTTCGGCTGTTAACCGAAAG...........GtCGAGAGTTCGAGTCTCTCCAGGGGCG chrVIII.trna3-AsnGTT Sc: 85.33 GCCTTTGTAGCGCAGTGGTtA.ACGCGTTCGGCTGTTAACCGAAAG...........GtCGAGAGTTCGAGTCTCTCCAAGGGCG chrX.trna5-AsnGTT Sc: 83.88

Asp tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. TCTTCCATAGTGTAGTGGTatA.TCATATCCGCCTGTCACGCGGGTG...........ACCCGGGTTCGAATCCCGGTGGGAGAG chrIII.trna4-AspGTC Sc: 71.89

Cys tRNAs

>>>>.>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<.<<<<. GGGTCCGTAGCTCAGCGGTA.GAGCAATTGATTGCAGATCAATCG...........GtCACAGGTTCGATTCCTGTCGTGCCCT chrVIII.trna1-CysGCA Sc: 68.17

Gln tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GGTTGCGTGGTGTAATGGTtA.TCACTTCAGACTCTGAATCTGACA...........ATCTGAGTTCGAATCTCGGCGCGACCA chrVI.trna3-GlnCTG Sc: 68.22 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GGTTCCATAGTGTAATGGTtA.GCACCCTGGACTTTGAATCCAGTA...........ATCTGAGTTCGAATCTCGGTGGAACCA chrVII.trna5-GlnTTG Sc: 68.54

Glu tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. TCCTTGTTGGTCCAGTGGTtA.GGATAGCTGCCTCTCACGCAGCAG...........GCTCGGGTTCGATTCCCGGACGAGGAA chrVIII.trna7-GluCTC Sc: 77.09 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. TTCCTACTGGTCTAGCGGTtA.GGATGTCTGCCTTTCAAGCAGGAG...........GTGGGGGTTCGATTCCCCCGTAGGGAA chrIX.trna2-GluTTC Sc: 68.61

Gly tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GCATCATTGGTTTAGTGGT.A.TAATGGCCGGTTGCCATCTGGCCG...........ACCCGAGTTCGATTCTCGGATGATGCA chrVI.trna4-GlyGCC Sc: 66.16 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GCATTGGTAGTATAGTGGTtA.TTATGTGAGCTTCCCAAGCTCATG...........GCCCGGGTTCGATTCCCGGTCAATGCA chrXI.trna2-GlyCCC Sc: 77.77 >>>.>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<.<<<. GCGTTGTTGGTCTAGTGGAtA.GGATAACAGCCTTCCAAGCTGTTG...........GCCCGGGTTCGATTCCCGGACATCGCA chrI.trna1-GlyTCC Sc: 72.96

His tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GCTGAATTAGCTTAGTGGTA.GAGCATGGCGTTGTGGCCGCCAAG...........ATGCGAGTTCGATTCTCGCATTCAGCA chrIX.trna3-HisGTG Sc: 69.11

Ile tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GTTCTGGTAGCTCAGTCGGTcAGAGCGTCGTGCTAATA.........................................ACGCGAAG...........GtCCAGGGTTCGAGCCCCTGTCGGAACA chrIV.trna1-IleAAT Sc: 75.71 >>>.>>>..>>>>.........<<<<.>>>>>................................................<<<<<................>>>>>.......<<<<<<<<.<<<. GCCCCCGTAGCTCAGTCGGTcAGAGCGTGGTACTTATAtgctggaaagctgtgcaaaacttggcttacactgctaagatATGCCAAG...........GtCGCGGGTTCGAGCCCCGCTGGAGGCA chrIV.trna2-IleTAT Sc: 68.39

Leu tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<. GGTTGGATGGCCGAGTGGTccA.AGGCGCTGGCTTAAGGTGCCAGT.CTC..TCAG.......GAGG.CGTGGGTTCGAACCCCAC.TCCAGCCA chrII.trna3-LeuAAG Sc: 69.09 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<. GTCAGGATGGCCGAGTGGTctA.AGGCGGTACGTTCAGGTCGTATT.CTC..ATT........GAGG.CACGGGTTCGAATCCCGT.TTCTGACA chrVII.trna4-LeuCAG Sc: 70.62 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<. GGTACAATGGCCGAGCGGTctA.AGGCGCTGGAATTAGGCTCCAGT.CTC..ATT........GAGG.CGGGGGTTCGAATCCCTC.TTGTGCCA chrXI.trna3-LeuTAG Sc: 62.34 >>>>>>>..>>>............<<<.>>>>.........<<<<..>>.>...........<.<<...>>>>>.......<<<<<.<<<<<<<. GGGACTTTGGCCGAGTGGTctA.AGGCGCTCGATTCAAGACTGAGTACGGT...........AACGTtCGGGGGTTCGAATCCCCC.AGGTCCCA chrIV.trna5-LeuCAA Sc: 62.09 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<. GGTGGTGTGGCCGAGCGGTctA.AGGCGGCAGACTTAAGATCTGTT.ATCGG.........GAGATAtCGTGGGTTCGAATCCCAT.CGCCACCA chrV.trna1-LeuTAA Sc: 67.07

Lys tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCCTGGCTAGCTCAACAGGAtAGAGCGACAGACTCTTAATCTGTAG...........GcTGCGGGTTCGAGTCCCGCGCTGGGTA chrIV.trna6-LysCTT Sc: 66.77 >>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<. ACCCTGTTAGCTCAGTTGGA.AGAGTGCTGGACTTTTAATCCAAGG...........GcCGTGGGTTCGAGTCCCGCACAGGGTG chrVII.trna2-LysTTT Sc: 68.56

Met tRNAs

>>>>>>>..>>>>.........<<<<.>>>>.........<<<<................>>>.>>.......<<<<<<<<<<<<. GTGACATTGGCGCAATAGGTA.GCGCGCTGGTCTCATAATCCAGAG...........GtTGCG.AGTTCGAGTCTCGCATGTCGCA chrXI.trna1-MetCAT Sc: 68.89 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>>.......<<<<<<<<<<<<. AGCATGGTAGCGCAAC.GGAA.GCGCGCTGGGCTCATAACCCAGAG...........GtTGTGtGGTTCGAATCCCACCCATGCTA chrIV.trna3-MetCAT Sc: 68.77

Phe tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCTGGATTAGCTCAGTGGAA.GAGCACTAGACTGAAGATCTAGGT...........GtCCCCGGTTCGAACCCGGGATCTAGCA chrIII.trna3-PheGAA Sc: 74.22

Pro tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGTGGTATGGTCTAGCGGTA.TGACGCTTGCTTAGGGTGCAAGAG...........GcCTTGGGTTCGAATCCCAATACCGCCC chrII.trna2-ProAGG Sc: 65.64 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCGTCATGGTCCAATGGTA.CGATACGTGCTTCGGGTGCACGTG...........A.CCCGAGTTCGATTCTCGGTGACGCCC chrX.trna2-ProCGG Sc: 63.27 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCTCGGTGGTCTAAGGGTA.TGATCTCCGCTTTGGGTGCGGAGG...........GcTCCAGGTTCAAATCCTGGCCGAGCCC chrIV.trna4-ProTGG Sc: 60.91

SeC tRNAs

Ser tRNAs

>>>>>>>...>>>............<<<.>>>>>.......<<<<<..>>>>.......<<<<...>>>>>.......<<<<<..<<<<<<<. GAAGACGTGtGCCGAGTGGTctA.AGGCGCTGGTTTAGAAAACCAGT.AGGCTCT....GCCTG.CGCAGGTTCGAATCCTGT..CGTCTTCG chrI.trna2-SerAGA Sc: 69.38 >>>>>>>...>>>............<<<.>>>>>.......<<<<<..>>>>.......<<<<...>>>>>.......<<<<<..<<<<<<<. GGCGGTGTG.GCCGAGTGGTcaA.AGGCAATCGATTCGAAATCGAT..GGACTCT....GTCCC.CACAGGTTCGAATCCTGT..CGCCGTCG chrII.trna5-SerCGA Sc: 61.55 >>>>>>>...>>>............<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<..<<<<<<<. GGTGCCGTG.GCCGAGTGGTccA.AGGCGACGGATTTGAAATCCGTTGAGG.TTC.....TCTCtCGCTGGTTCGAATCCAGT..CGGCATCG chrIII.trna1-SerTGA Sc: 66.40 >>>>>>>...>>..............<<.>>>>>.......<<<<<..>>>>.......<<<<...>>>>>.......<<<<<..<<<<<<<. GACCTCGTA.GCAAAGTGGTt.A.ACGCGGTAGATTGCTAATCTATT.TCCTTCT....GGGAG.CGCGAGTTCGAATCTCGC..CGAGGTCG chrX.trna1-SerGCT Sc: 74.68

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCCGCCATAGCTAAGT.GGTtA.TAGCGCCAGTTTAGTAAACTGGAG...........GcCCCGAGTTCGAGTCTCGGTGGTGGCT chrV.trna2-ThrAGT Sc: 74.46 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCTTGTTAGTTTAGT.GGC.A.AAACGGTTGATTCGTAATCAACTG...........A.CGCGAGTTCGATTCTCGCACAAGCCT chrII.trna1-ThrCGT Sc: 69.45 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCCATTATAGCTCAGTAGGT.A.GAGCTTTAGCTTTGTAAGCTAAGG...........GtCCTGGGTTCGAGTCCCAGTGGTGGCT chrVIII.trna4-ThrTGT Sc: 75.41

Trp tRNAs

>>>>>.>..>>>>........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<.<<<<<. GACGGTGTGGCGCAACGGTA.GCGCGTCGGATTCCAGTCCCGAAG...........GtTCTAGGTTCAAATCCTGGCTCCGTCA chrVI.trna1-TrpCCA Sc: 63.04

Tyr tRNAs

>>>>>>>..>>>>........<<<<.>>>>>...................<<<<<................>>>>>.......<<<<<<<<<<<<. CTCTCAATAGCTCAGTGGTA.GAGCATTCGACTGTAGaggtgtgctgatATCGAATG...........GcCGCTGGTTCGACTCCAGCTTGGGAGA chrVIII.trna5-TyrGTA Sc: 69.39

Val tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GTGACCTTAGTGTAGTGGTtA.TCACGTTCGCCTAACACGCGGAAG...........GtCCCCAGTTCGAGCCTGGGAGGTCGCA chrVIII.trna2-ValAAC Sc: 73.81 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCTTTTGTAGTGTAGTGGTtA.TCACGTATCCTTCACACGGATGAG...........GtCCTCGGTTCGAACCCGAGCAAAAGCA chrX.trna4-ValCAC Sc: 76.98 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCTTGTAGTGTAGTGGTtA.TCACGCATCCTTTACACGGATGAG...........GtCCTTGGTTCGATCCCGAGCGGGGGCA chrIII.trna2-ValTAC Sc: 79.48

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.