GtRNAdb

tRNAscan-SE Analysis of Encephalitozoon cuniculi

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chrII 1 63209 63279 Thr CGT tcatgcccaa aacattttga0 0 69.45 44.7624.69 Both
chrII 2 104134 104205 Pro AGG ggccttgtga ttttgcctct0 0 65.64 40.9824.66 Both
chrII 3 179296 179377 Leu AAG ttgcactgta ttttgtttct0 0 69.09 47.2821.81 Both
chrII 4 117723 117653 Ala TGC cgcgaggtga ttttgccaac0 0 64.13 51.1213.01 Both
chrII 5 62756 62675 Ser CGA tgaacttgga gggttgcttt0 0 61.55 34.3127.24 Both
 
chrIII 1 41045 41127 Ser TGA ctgcctgtga ttttgccgtc0 0 66.40 42.5223.88 Both
chrIII 2 152612 152684 Val TAC gggggctatc tttttgtcca0 0 79.48 57.0122.47 Both
chrIII 3 132248 132177 Phe GAA tggccaaaca ttccattttg0 0 74.22 52.1122.11 Both
chrIII 4 44699 44627 Asp GTC tcagctaaca aaattccttt0 0 71.89 51.5920.30 Both
 
chrIV 1 25454 25527 Ile AAT tgaaaatata cttttgttga0 0 75.71 54.3221.39 Both
chrIV 2 57467 57581 Ile TAT aggtttgcaa tttttgctgc57505 57545 68.39 53.8114.58 Both
chrIV 3 180828 180900 Met CAT ttccccgcaa gtggttttgg0 0 68.77 44.2624.51 Eufind
chrIV 4 182891 182962 Pro TGG catggctaga ttttgtcttc0 0 60.91 38.0422.87 Both
chrIV 5 119683 119602 Leu CAA ggacgcccga ttttgtcccg0 0 62.09 39.9022.19 Both
chrIV 6 22702 22629 Lys CTT gagctagcaa aaggtttttt0 0 66.77 47.2419.53 Both
 
chrV 1 87231 87313 Leu TAA agcctgccga tccgttttgc0 0 67.07 44.0323.04 Both
chrV 2 118514 118586 Thr AGT tgggtggcta ctgttttgtc0 0 74.46 52.7421.72 Both
 
chrVI 1 120887 120958 Trp CCA ttttcttata cttctttttc0 0 63.04 51.2211.82 Both
chrVI 2 165236 165308 Arg ACG ttgacaagga tgggtctttt0 0 74.98 55.0919.89 Both
chrVI 3 201539 201610 Gln CTG ataaagagaa gttgattttg0 0 68.22 46.9121.31 Both
chrVI 4 54370 54300 Gly GCC caggctgcaa ttttgttccc0 0 66.16 37.9428.22 Both
 
chrVII 1 171161 171231 Arg TCG ccatgtacaa tttttacaca0 0 59.32 48.7910.53 Both
chrVII 2 172081 172153 Lys TTT atcacccaga tctcttttac0 0 68.56 54.6013.96 Both
chrVII 3 177782 177853 Ala AGC gaggccgaga ttttactctt0 0 71.92 47.4824.44 Both
chrVII 4 113069 112989 Leu CAG gggcatgcaa tctttttgta0 0 70.62 38.4932.13 Both
chrVII 5 32167 32096 Gln TTG gtgtcgttga ctgttttcca0 0 68.54 48.2420.30 Both
 
chrVIII 1 68209 68280 Cys GCA gtgggtagta ttcatttttc0 0 68.17 50.4117.76 Both
chrVIII 2 107288 107360 Val AAC ggagtggcaa ttcttttgtt0 0 73.81 52.5721.24 Both
chrVIII 3 213588 213660 Asn GTT gttgtcacca tctttttgac0 0 85.33 63.9921.34 Both
chrVIII 4 200354 200282 Thr TGT cgggctttga ttttgaccga0 0 75.41 56.9518.46 Both
chrVIII 5 107482 107399 Tyr GTA ggcatactag ttcttttttg107446 107435 69.39 45.2724.12 Both
chrVIII 6 79525 79453 Arg TCT tggcccctga gtctcttttc0 0 71.33 52.9518.38 Both
chrVIII 7 32736 32665 Glu CTC ttgcataata tcttcctttt0 0 77.09 54.4122.68 Both
 
chrX 1 34328 34409 Ser GCT cgcaggctaa ctctttttac0 0 74.68 46.8027.88 Both
chrX 2 55869 55939 Pro CGG tatttccgga gaggcttttg0 0 63.27 36.7326.54 Both
chrX 3 147667 147737 Ala CGC gagggcagca cttctttttc0 0 62.98 50.8212.16 Eufind
chrX 4 21671 21599 Val CAC cccactgtga ttttcgcaat0 0 76.98 49.4127.57 Both
chrX 5 17842 17770 Asn GTT agcgccatca ttttgtcggt0 0 83.88 61.4722.41 Both
 
chrXI 1 57751 57823 Met CAT ctgaaaggta ttttgaccca0 0 68.89 50.7618.13 Both
chrXI 2 158598 158669 Gly CCC cagcgtgtaa ttttggccct0 0 77.77 53.8323.94 Both
chrXI 3 53750 53670 Leu TAG agccaacgta acattttgat0 0 62.34 38.6623.68 Both
 
chrIX 1 158716 158788 Arg CCT ggaagctgca tctttttatt0 0 75.43 53.5221.91 Both
chrIX 2 210542 210613 Glu TTC atagatagaa tttcttttga0 0 68.61 48.3420.27 Both
chrIX 3 221638 221708 His GTG agccatattg tcttttggtg0 0 69.11 39.3329.78 Both
 
chrI 1 55599 55670 Gly TCC tagcctctga cttttgccct0 0 72.96 54.3518.61 Both
chrI 2 93040 93123 Ser AGA tgcgccattc cttttgtacg0 0 69.38 35.7233.66 Eufind


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.