GtRNAdb

tRNAscan-SE Analysis of Escherichia coli SECEC SMS 3 5

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 234517 234593 Ile GAT aaacctctac aatttgcatc0 0 88.37 64.6323.74 Both
chr 2 234636 234711 Ala TGC tacatgttat tctctgtagt0 0 88.77 67.0521.72 Both
chr 3 238054 238130 Asp GTC agaattcggt cttattaaga0 0 90.74 74.3616.38 Both
chr 4 246275 246351 Asp GTC aacacaacgc atattcagaa0 0 90.74 74.3616.38 Both
chr 5 306640 306715 Thr CGT tcctttcagg tttcaaactc0 0 91.49 71.5319.96 Both
chr 6 370255 370335 Pseudo ??? atatcaaaaa acttttcata0 0 28.45 7.3221.13 Eufind
chr 7 588634 588710 Arg TCT cggtatcaac tttcttcttc0 0 89.39 64.8024.59 Both
chr 8 773152 773227 Lys TTT acgaaaaagt ctaacatagt0 0 99.54 78.2721.27 Both
chr 9 773263 773338 Val TAC gcgtagtatc ccgggtcgtt0 0 94.34 73.1021.24 Both
chr 10 773341 773416 Lys TTT acccaccacc ctaattacgg0 0 99.54 78.2721.27 Both
chr 11 773468 773543 Val TAC gcgcagtatc ctcgggtcgt0 0 94.34 73.1021.24 Both
chr 12 773547 773622 Lys TTT cccaccactc attttaaaga0 0 99.54 78.2721.27 Both
chr 13 773671 773746 Lys TTT acacccgtat tcctgaatga0 0 99.54 78.2721.27 Both
chr 14 773780 773855 Lys TTT atcccgcaag atgtaaaaaa0 0 99.54 78.2721.27 Both
chr 15 1158865 1158940 Asn GTT ttctcacgat aattttagtt0 0 87.13 60.1027.03 Both
chr 16 1173409 1173498 Ser CGA ccatctgaac aaattcaatc0 0 75.97 42.9433.03 Both
chr 17 1188836 1188911 Met CAT tcctgcgccc gccgccacta0 0 88.46 67.3321.13 Both
chr 18 1188913 1188989 Lys TTT gggccaccag gtgccgactt0 0 49.26 18.6330.63 Eufind
chr 19 1188992 1189067 Thr TGT gcggtccagt tatgcgggca0 0 91.83 73.9817.85 Both
chr 20 1189071 1189145 Gly TCC ggcaccatat gttagagtct0 0 64.85 36.4228.43 Eufind
chr 21 1267399 1267474 Gly GCC cttgatgaat gtttaaaaga0 0 93.74 68.4125.33 Both
chr 22 1267529 1267602 Cys GCA tgaagaattt ctttcttccc0 0 51.48 17.6333.85 Both
chr 23 1267615 1267701 Leu TAA ttcttcccga tgggaaagat0 0 71.59 39.6031.99 Both
chr 24 1930659 1930743 Tyr GTA attaccccgt tctcaagcat0 0 66.93 38.6628.27 Both
chr 25 1930778 1930862 Tyr GTA aattacccct tcacttttca0 0 66.93 38.6628.27 Both
chr 26 2109644 2109731 Ser GGA acaacaattt tctttaaaga0 0 68.60 32.2336.37 Both
chr 27 2155869 2155956 Ser TGA gcgtcattcc aataagataa0 0 76.89 39.3837.51 Both
chr 28 2261374 2261461 Ser GGA aaaacaattt gattataagc0 0 68.60 32.2336.37 Both
chr 29 2371871 2371947 Pro GGG agccacgagt aaaatcccaa0 0 77.97 51.9526.02 Both
chr 30 2555194 2555268 Arg CCT atgccgcatt tttatcatcc0 0 66.39 33.6032.79 Both
chr 31 2612062 2612137 Val TAC cacacagcgg actactttat0 0 94.34 73.1021.24 Both
chr 32 2612182 2612257 Val TAC attgagaagt ctttctcgcc0 0 94.34 73.1021.24 Both
chr 33 2612304 2612379 Val TAC gtaccgaagt cttcgggtcg0 0 94.34 73.1021.24 Both
chr 34 2612384 2612459 Lys TTT ccaccacttc atgtaaaaaa0 0 99.54 78.2721.27 Both
chr 35 3030525 3030601 Met CAT catccacgga attaaaattt0 0 86.07 61.3324.74 Both
chr 36 3030635 3030711 Met CAT agtacggtga atcaaaattt0 0 86.07 61.3324.74 Both
chr 37 3030746 3030822 Met CAT agtacggtga acacttatga0 0 86.07 61.3324.74 Both
chr 38 3197159 3197234 Phe GAA gcgccccgtt ctttcacttc0 0 84.11 58.0126.10 Both
chr 39 3441716 3441791 Met CAT ccgctaccat gacatagcaa0 0 93.86 70.2023.66 Both
chr 40 4081340 4081430 SeC(p) TCA atcgaggcgc gccaaacttc0 0 75.19 0.000.00 Eufind
chr 41 4223229 4223304 Glu TTC agactgatac cttgctggtt0 0 59.80 31.6028.20 Both
chr 42 4226661 4226737 Asp GTC agaattcggt ccctaattag0 0 90.74 74.3616.38 Both
chr 43 4226746 4226821 Trp CCA caccctaatt gaaatcatcc0 0 82.06 62.6219.44 Both
chr 44 4262022 4262098 Arg CCG acggcgctaa tttagtcccg0 0 89.49 68.5820.91 Both
chr 45 4262157 4262232 His GTG atttgtagtg ttattagaag0 0 84.86 62.0122.85 Both
chr 46 4262253 4262339 Leu CAG ttgtgacaat cgactttaaa0 0 69.07 43.7225.35 Both
chr 47 4262382 4262458 Pro TGG agcagtattt attttgaacc0 0 92.73 68.9023.83 Both
chr 48 4332203 4332278 Glu TTC agactgatac cttgctggtt0 0 59.80 31.6028.20 Both
chr 49 4514109 4514184 Glu TTC agactgatac cttgctggtt0 0 59.80 31.6028.20 Both
chr 50 4520960 4521035 Thr TGT gctacttgat tcaagtccgg0 0 91.83 73.9817.85 Both
chr 51 4521044 4521128 Tyr GTA catcaagtcc atttcggcca0 0 67.63 38.5629.07 Both
chr 52 4521245 4521319 Gly TCC gttccaggat agatgtgctg0 0 64.85 36.4228.43 Eufind
chr 53 4521326 4521401 Thr GGT tccaagatgt cttcttttct0 0 94.75 66.3228.43 Both
chr 54 4554280 4554355 Glu TTC agactgatac cttgctggtt0 0 59.80 31.6028.20 Both
chr 55 4737021 4737096 Gly GCC taagtagtac aaatttgaaa0 0 93.74 68.4125.33 Both
chr 56 4737254 4737329 Gly GCC cgaagattaa aaatttgaaa0 0 93.74 68.4125.33 Both
chr 57 4737365 4737440 Gly GCC gaccacccaa aattcttctc0 0 93.74 68.4125.33 Both
chr 58 4851315 4851399 Leu CAA cctcttcagt aaagtatgta0 0 79.12 47.2431.88 Both
chr 59 5034734 5034648 Leu CAG ttgatggtat aaaaccacgt0 0 69.07 43.7225.35 Both
chr 60 5034619 5034533 Leu CAG ctcgcactgg aacgaggcga0 0 66.59 42.7523.84 Both
chr 61 5034498 5034412 Leu CAG agatgactgt attatcttta0 0 69.07 43.7225.35 Both
chr 62 4707593 4707518 Phe GAA gcgccccgtt aattcatata0 0 84.11 58.0126.10 Both
chr 63 3934840 3934764 Pro CGG gccccgcatt aattcgaaaa0 0 85.12 57.5627.56 Both
chr 64 3654388 3654312 Ile GAT aaacctctac aatttgcacc0 0 88.37 64.6323.74 Both
chr 65 3654269 3654194 Ala TGC tacatgttat tctctgtagt0 0 88.77 67.0521.72 Both
chr 66 3650882 3650807 Thr GGT aatttagcgt ctttttaggt0 0 88.70 57.6431.06 Both
chr 67 3548914 3548828 Leu GAG tagtatccgt aattccagaa0 0 70.30 38.4231.88 Both
chr 68 3545045 3544969 Met CAT acgtttcagg ctttccctta0 0 86.07 61.3324.74 Both
chr 69 3078039 3077966 Gly CCC gcatctcgaa gaatctcccc0 0 78.75 54.8423.91 Both
chr 70 2893869 2893777 Ser GCT agaggcgtgt tttgcatccg0 0 72.46 40.3332.13 Both
chr 71 2893773 2893697 Arg ACG accgccattt tctcttactt0 0 87.22 63.5623.66 Both
chr 72 2893632 2893556 Arg ACG gtttcccgat tctcttactt0 0 87.22 63.5623.66 Both
chr 73 2893493 2893417 Arg ACG atttcccgat tctcttactt0 0 87.22 63.5623.66 Both
chr 74 2893353 2893277 Arg ACG ttttcccgat tcttctccgt0 0 87.22 63.5623.66 Both
chr 75 2859455 2859380 Met CAT gcatactcaa aatcatcatt0 0 92.29 69.0723.22 Both
chr 76 2824498 2824423 Glu TTC agactgatac cttgctggtt0 0 59.80 31.6028.20 Both
chr 77 2607614 2607539 Ala GGC tttacgtgac aattttgcac0 0 86.51 68.2718.24 Both
chr 78 2607499 2607424 Ala GGC aacgcatcgt aatttcaaac0 0 86.51 68.2718.24 Both
chr 79 1516424 1516348 Val GAC ctacaacgtt tcctgcgtcc0 0 92.34 65.3027.04 Both
chr 80 1516343 1516267 Val GAC gcaccatcct gattttctta0 0 96.76 73.6523.11 Both
chr 81 1172417 1172342 Asn GTT ttcacacgat aattctaaaa0 0 87.13 60.1027.03 Both
chr 82 1157116 1157041 Asn GTT caacagcgat aatttctgaa0 0 87.13 60.1027.03 Both
chr 83 1154707 1154632 Asn GTT ttcacacgat aattcaaaaa0 0 87.13 60.1027.03 Both
chr 84 696652 696576 Met CAT aaaaaaagat tcttttttgc0 0 96.18 76.8719.31 Both
chr 85 696567 696483 Leu TAG catctttttt ttcaccagaa0 0 78.30 51.4926.81 Both
chr 86 696459 696385 Gln TTG gttgtacgga tcttcttcga0 0 74.33 43.9330.40 Both
chr 87 696350 696276 Gln TTG gcccggttat tcgaagaaac0 0 74.33 43.9330.40 Both
chr 88 696260 696184 Met CAT gaaacaatct aattctgaat0 0 96.18 76.8719.31 Both
chr 89 696135 696061 Gln CTG accaatttgt atttattcaa0 0 75.83 48.1727.66 Both
chr 90 696023 695949 Gln CTG tgcacccagt cattaaaaaa0 0 75.83 48.1727.66 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.