GtRNAdb

tRNAscan-SE Analysis of Felis catus (cat) (catChrV17e Dec 2008)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA3039
Selenocysteine tRNAs (TCA)16
Possible suppressor tRNAs (CTA,TTA)38
tRNAs with undetermined
or unknown isotypes
2
Predicted pseudogenes0
Total tRNAs3095


Intron Summary

tRNAs with introns
369
Ala
CGC
1
Gly
CCC
1
Gly
TCC
1
Pro
GGG
1
Pro
TGG
3
Thr
CGT
1
Val
TAC
1
Ser
TGA
1
Arg
CCG
1
Arg
TCG
75
Arg
CCT
8
Arg
TCT
5
Leu
TAA
3
Asn
ATT
1
Asn
GTT
2
Lys
CTT
167
Lys
TTT
4
Glu
CTC
5
His
GTG
1
Gln
CTG
5
Gln
TTG
58
Ile
TAT
4
Tyr
GTA
10
Supres
CTA
3
Supres
TTA
3
Trp
CCA
2
SelCys
TCA
2
 


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
18
GGC
1
CGC
6
TGC
8
33
GlyACC
1
GCC
9
CCC
6
TCC
40
56
ProAGG
7
GGG
1
CGG
7
TGG
52
67
ThrAGT
7
GGT
 
CGT
5
TGT
11
23
ValAAC
8
GAC
 
CAC
6
TAC
5
19

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
7
GGA
1
CGA
5
TGA
11
ACT
1
GCT
9
 
 
 
 
34
ArgACG
7
GCG
6
CCG
23
TCG
985
 
 
 
 
CCT
46
TCT
47
1114
LeuAAG
5
GAG
 
CAG
1
TAG
26
 
 
 
 
CAA
1
TAA
23
56

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
1
GAA
9
 
 
 
 
10
AsnATT
5
GTT
28
 
 
 
 
33
Lys 
 
 
 
CTT
720
TTT
42
762
AspATC
1
GTC
9
 
 
 
 
10
Glu 
 
 
 
CTC
38
TTC
11
49
HisATG
 
GTG
14
 
 
 
 
14
Gln 
 
 
 
CTG
38
TTG
625
663

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
9
GAT
 
 
 
TAT
7
16
Met 
 
 
 
CAT
21
 
 
21
TyrATA
 
GTA
10
 
 
 
 
10
Supres 
 
 
 
CTA
10
TTA
28
38
CysACA
1
GCA
30
 
 
 
 
31
Trp 
 
 
 
CCA
18
 
 
18
SelCys 
 
 
 
 
 
TCA
16
16

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.