GtRNAdb

tRNAscan-SE Analysis of Felis catus (cat) (Felis_catus-6.2 Sept 2011)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA3711
Selenocysteine tRNAs (TCA)18
Possible suppressor tRNAs (CTA,TTA)49
tRNAs with undetermined
or unknown isotypes
1
Predicted pseudogenes0
Total tRNAs3779


Intron Summary

tRNAs with introns
487
Ala
CGC
1
Ala
TGC
1
Gly
ACC
1
Gly
CCC
1
Gly
TCC
2
Pro
GGG
1
Pro
CGG
1
Pro
TGG
7
Thr
CGT
1
Ser
TGA
4
Arg
CCG
2
Arg
TCG
102
Arg
CCT
9
Arg
TCT
5
Leu
CAA
7
Leu
TAA
3
Asn
ATT
1
Asn
GTT
2
Lys
CTT
214
Lys
TTT
4
Glu
CTC
7
His
GTG
2
Gln
CTG
7
Gln
TTG
75
Ile
TAT
6
Tyr
GTA
10
Supres
CTA
4
Supres
TTA
3
Trp
CCA
2
SelCys
TCA
2
 


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
18
GGC
1
CGC
7
TGC
10
36
GlyACC
2
GCC
10
CCC
6
TCC
48
66
ProAGG
8
GGG
1
CGG
7
TGG
68
84
ThrAGT
9
GGT
 
CGT
9
TGT
13
31
ValAAC
8
GAC
 
CAC
9
TAC
6
23

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
8
GGA
1
CGA
5
TGA
14
ACT
2
GCT
12
 
 
 
 
42
ArgACG
9
GCG
9
CCG
24
TCG
1201
 
 
 
 
CCT
53
TCT
54
1350
LeuAAG
6
GAG
 
CAG
5
TAG
33
 
 
 
 
CAA
8
TAA
19
71

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
1
GAA
12
 
 
 
 
13
AsnATT
5
GTT
28
 
 
 
 
33
Lys 
 
 
 
CTT
887
TTT
50
937
AspATC
1
GTC
9
 
 
 
 
10
Glu 
 
 
 
CTC
44
TTC
15
59
HisATG
2
GTG
16
 
 
 
 
18
Gln 
 
 
 
CTG
47
TTG
782
829

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
10
GAT
 
 
 
TAT
9
19
Met 
 
 
 
CAT
24
 
 
24
TyrATA
 
GTA
10
 
 
 
 
10
Supres 
 
 
 
CTA
12
TTA
37
49
CysACA
1
GCA
32
 
 
 
 
33
Trp 
 
 
 
CCA
23
 
 
23
SelCys 
 
 
 
 
 
TCA
18
18

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.