GtRNAdb

tRNAscan-SE Analysis of Flavobacterium johnsoniae UW101

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA60
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes2
Total tRNAs62


Intron Summary

tRNAs with introns
0


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
 
GGC
1
CGC
 
TGC
6
7
GlyACC
 
GCC
1
CCC
 
TCC
2
3
ProAGG
 
GGG
 
CGG
 
TGG
2
2
ThrAGT
 
GGT
1
CGT
 
TGT
3
4
ValAAC
 
GAC
 
CAC
 
TAC
3
3

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
 
GGA
1
CGA
 
TGA
2
ACT
 
GCT
1
 
 
 
 
4
ArgACG
1
GCG
 
CCG
 
TCG
1
 
 
 
 
CCT
 
TCT
1
3
LeuAAG
 
GAG
1
CAG
 
TAG
1
 
 
 
 
CAA
1
TAA
2
5

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
2
 
 
 
 
2
AsnATT
 
GTT
2
 
 
 
 
2
Lys 
 
 
 
CTT
 
TTT
3
3
AspATC
 
GTC
2
 
 
 
 
2
Glu 
 
 
 
CTC
 
TTC
3
3
HisATG
 
GTG
1
 
 
 
 
1
Gln 
 
 
 
CTG
 
TTG
2
2

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
 
GAT
6
 
 
TAT
 
6
Met 
 
 
 
CAT
4
 
 
4
TyrATA
 
GTA
2
 
 
 
 
2
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
 
 
 
 
 
0
Trp 
 
 
 
CCA
2
 
 
2
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.