GtRNAdb

tRNAscan-SE Analysis of Takifugu rubripes (fr2 Oct 2004)

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA588
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
10
Predicted pseudogenes123
Total tRNAs722


Intron Summary

tRNAs with introns
43
Val
CAC
1
Arg
GCG
1
Arg
TCT
12
Leu
CAA
9
His
ATG
1
Ile
TAT
5
Tyr
GTA
14


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
13
GGC
 
CGC
6
TGC
8
27
GlyACC
 
GCC
18
CCC
4
TCC
12
34
ProAGG
10
GGG
 
CGG
6
TGG
7
23
ThrAGT
18
GGT
 
CGT
6
TGT
8
32
ValAAC
15
GAC
 
CAC
24
TAC
9
48

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
11
GGA
 
CGA
3
TGA
8
ACT
 
GCT
16
 
 
 
 
38
ArgACG
16
GCG
1
CCG
3
TCG
7
 
 
 
 
CCT
10
TCT
13
50
LeuAAG
11
GAG
 
CAG
21
TAG
4
 
 
 
 
CAA
9
TAA
7
52

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
20
 
 
 
 
20
AsnATT
 
GTT
24
 
 
 
 
24
Lys 
 
 
 
CTT
18
TTT
20
38
AspATC
1
GTC
24
 
 
 
 
25
Glu 
 
 
 
CTC
20
TTC
15
35
HisATG
2
GTG
20
 
 
 
 
22
Gln 
 
 
 
CTG
13
TTG
9
22

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
12
GAT
 
 
 
TAT
6
18
Met 
 
 
 
CAT
35
 
 
35
TyrATA
1
GTA
14
 
 
 
 
15
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
12
 
 
 
 
12
Trp 
 
 
 
CCA
18
 
 
18
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.