GtRNAdb

tRNAscan-SE Analysis of Takifugu rubripes (fr2 Oct 2004)

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>> Genome Seq
tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chrUn 573 211415998 211415928 Ala AGC ctcaccgtaa aaagtttgtt0 0 24.93 15.958.98 Eufind
chrUn 398 387545219 387545147 Ala AGC actgctgaga cggaggttca0 0 45.06 23.3121.75 tRNAscan
chrUn 409 384032704 384032632 Ala AGC actgctgaga cggaggttca0 0 46.79 26.2620.53 Both
chrUn 402 386442439 386442367 Ala AGC atcatttagc cggaggttca0 0 58.07 33.7424.33 Both
chrUn 121 168227142 168227214 Ala AGC tggtccgcac ataaaccttt0 0 63.06 39.9523.11 Both
chrUn 167 211416323 211416395 Ala AGC gtgtatacaa gcaagttgtg0 0 63.68 41.0222.66 Both
chrUn 168 211417325 211417397 Ala AGC tgccttacca ggaagttttt0 0 63.68 41.0222.66 Both
chrUn 229 279357579 279357651 Ala AGC ttgttttcac attttcactg0 0 63.68 41.0222.66 Both
chrUn 519 261719031 261718959 Ala AGC gtaacgcgaa cttttattga0 0 63.68 41.0222.66 Both
chrUn 520 261718777 261718705 Ala AGC tcaaacgtaa caagtttgtt0 0 63.68 41.0222.66 Both
chrUn 521 261718341 261718269 Ala AGC tttcacggac tcctattggt0 0 63.68 41.0222.66 Both
chrUn 574 211389682 211389610 Ala AGC tggggcacca aaactttttt0 0 63.68 41.0222.66 Both
chrUn 86 114572851 114572923 Ala AGC tacacagact aggtgccttt0 0 63.68 41.0222.66 Both
chrUn 24 39820994 39821064 Ala CGC gcccttctcc cacttgtttt0 0 54.34 29.0725.27 Eufind
chrUn 194 240600900 240600971 Ala CGC gagctgtcac cttgtcttta0 0 68.08 50.0718.01 Both
chrUn 539 240598153 240598082 Ala CGC gtagtcaaat cttgtcttta0 0 71.20 53.0818.12 Both
chrUn 94 131078442 131078513 Ala CGC aacgtccaat acgcttttac0 0 72.92 53.1419.78 Both
chrUn 498 294422868 294422797 Ala CGC tctccacggg tttagaacca0 0 76.95 53.3623.59 Both
chrUn 529 257777561 257777490 Ala CGC catgtcttgt tttttatttt0 0 77.17 53.5823.59 Both
chrUn 401 386446676 386446604 Ala TGC agcatttaga tttaggtact0 0 56.84 32.5624.28 Both
chrUn 403 386441671 386441599 Ala TGC agcatttaga tttaggtact0 0 56.84 32.5624.28 Both
chrUn 408 384033438 384033366 Ala TGC agcatttaga tttaggtact0 0 57.99 35.3522.64 Both
chrUn 147 192065170 192065241 Ala TGC aggttaacga acttttgccc0 0 72.71 49.1223.59 Both
chrUn 518 264465060 264464989 Ala TGC gtcatctacc ccatatcttt0 0 72.71 49.1223.59 Both
chrUn 524 258998009 258997938 Ala TGC cttaactgta cacttttttt0 0 72.71 49.1223.59 Both
chrUn 620 146114311 146114240 Ala TGC ggaagcaggt gtcttttctt0 0 72.71 49.1223.59 Both
chrUn 87 114814984 114815055 Ala TGC ttgctaggtg tatgttcaga0 0 74.02 50.4223.60 Both
 
chrUn 557 229668325 229668253 Arg ACG acagatacgt ctttttctga0 0 60.78 43.8816.90 Both
chrUn 285 336575695 336575767 Arg ACG cacatcatgt tttatttttg0 0 68.07 51.1816.89 Both
chrUn 286 336580756 336580828 Arg ACG cacatcatgt tttatttttg0 0 68.07 51.1816.89 Both
chrUn 49 84894499 84894571 Arg ACG agtctctgtc gtttctttta0 0 68.07 51.1816.89 Both
chrUn 50 84898931 84899003 Arg ACG agtgtccgct tttcattatt0 0 68.07 51.1816.89 Both
chrUn 5 10302802 10302874 Arg ACG agcttccaaa catagttttt0 0 68.07 51.1816.89 Both
chrUn 531 254145684 254145612 Arg ACG tggttgtcga ttcattttag0 0 68.07 51.1816.89 Both
chrUn 545 236827905 236827833 Arg ACG acagtgggcc caatcttttg0 0 68.07 51.1816.89 Both
chrUn 556 229668766 229668694 Arg ACG cctgtcacgt ctcttttctc0 0 68.07 51.1816.89 Both
chrUn 558 229667451 229667379 Arg ACG accatctcgt ctcttttctc0 0 68.07 51.1816.89 Both
chrUn 583 201128160 201128088 Arg ACG tggaacctgt ctctttctgt0 0 68.07 51.1816.89 Both
chrUn 655 98011270 98011198 Arg ACG ggcagcatca gaaaattttg0 0 68.07 51.1816.89 Both
chrUn 662 84813804 84813732 Arg ACG cacatacaca gaagttttgc0 0 68.07 51.1816.89 Both
chrUn 663 84813161 84813089 Arg ACG tgagtcatgt ttaattttga0 0 68.07 51.1816.89 Both
chrUn 691 33579641 33579569 Arg ACG ttgattttgt tcacatttta0 0 68.07 51.1816.89 Both
chrUn 607 176440379 176440307 Arg ACG ccatccctgt ttagagtttt0 0 72.37 52.4919.88 Both
chrUn 93 130749772 130749844 Arg CCG accaccacac ttaattggtt0 0 62.79 42.2820.51 Both
chrUn 303 356516827 356516899 Arg CCG gtcacacgat accgcggata0 0 65.49 49.2416.25 Both
chrUn 227 275941808 275941880 Arg CCG ctatttcgtt taaaatgtta0 0 65.86 50.2715.59 Both
chrUn 81 111009558 111009630 Arg CCT ctcagagaaa taaaatcagc0 0 65.83 51.2914.54 Both
chrUn 104 143359719 143359791 Arg CCT ttcagagcaa agcttaagca0 0 68.89 52.6516.24 Both
chrUn 82 111009850 111009922 Arg CCT ctcagaaaat taattactgc0 0 68.89 52.6516.24 Both
chrUn 79 111008918 111008990 Arg CCT tgggaacaaa taaaatcagc0 0 70.20 53.9516.25 Both
chrUn 176 229326926 229326998 Arg CCT gccattcaaa attgttgctt0 0 70.63 54.3916.24 Both
chrUn 43 80191225 80191297 Arg CCT atgcacaggt taaattgctc0 0 70.63 54.3916.24 Both
chrUn 471 326798880 326798808 Arg CCT cagaagcgcc ttaacttttg0 0 70.63 54.3916.24 Both
chrUn 569 215678373 215678301 Arg CCT tgcaatgtat tgagtctttt0 0 70.63 54.3916.24 Both
chrUn 7 14807334 14807406 Arg CCT gttacaacaa atctgctttt0 0 70.63 54.3916.24 Both
chrUn 80 111009210 111009282 Arg CCT ctcagaaaat taactaccac0 0 71.47 55.2216.25 Both
chrUn 61 96316957 96317033 Arg GCG ttggagcaga tttaaatgta96316994 96316998 41.35 26.8714.48 Eufind
chrUn 69 97066211 97066283 Arg TCG ccaaatggca acagatgttt0 0 50.48 28.9721.51 Both
chrUn 22 36041014 36041086 Arg TCG acatcatcaa aggtctgtat0 0 66.17 45.5120.66 Both
chrUn 203 253976839 253976911 Arg TCG ttgatcctat agtgttgctt0 0 66.64 45.9820.66 Both
chrUn 672 64841893 64841821 Arg TCG acagagccaa actcttttta0 0 67.76 50.1617.60 Both
chrUn 510 273552998 273552926 Arg TCG cttctcatgt ctttttatac0 0 70.52 51.5019.02 Both
chrUn 296 353603939 353604011 Arg TCG ggtcatcaga ttctttttct0 0 70.95 50.4620.49 Both
chrUn 236 290458890 290458962 Arg TCG atcgttcggt acttcgacgt0 0 73.35 54.1519.20 Both
chrUn 132 180847425 180847498 Arg TCT tgctggcgta tgccgtgctg0 0 72.95 53.6419.31 Both
chrUn 629 131068852 131068764 Arg TCT tgcaacaggt cgtttttgtg131068815 131068800 70.86 51.1919.67 Both
chrUn 108 152432246 152432337 Arg TCT caaagtaagc gattttgttt152432283 152432301 71.05 50.6020.45 Both
chrUn 608 171669572 171669484 Arg TCT gtgtttttaa acttttatgt171669535 171669520 62.93 41.4321.50 Both
chrUn 153 205086941 205087026 Arg TCT agctatgcgt cttttggctc205086978 205086990 62.67 47.6615.01 Both
chrUn 211 264218849 264218940 Arg TCT tggacacgca gcttttgcat264218886 264218904 68.35 47.9020.45 Both
chrUn 212 264220742 264220833 Arg TCT tgacgtaacg ctccttttta264220779 264220797 68.35 47.9020.45 Both
chrUn 231 282051415 282051506 Arg TCT atatgagtgt gcctgtaatg282051452 282051470 66.54 46.1320.41 Both
chrUn 12 28308978 28309069 Arg TCT caggttagca accttttgga28309015 28309033 65.39 44.9420.45 Both
chrUn 13 28309347 28309438 Arg TCT catgttagca accttttgga28309384 28309402 66.19 45.7420.45 Both
chrUn 14 28314880 28314971 Arg TCT caagtcagca accttttgga28314917 28314935 64.92 44.4720.45 Both
chrUn 15 28315249 28315340 Arg TCT caggggagca cccttttgga28315286 28315304 62.22 41.7720.45 Both
chrUn 310 365080660 365080749 Arg TCT attgttcccc ctccttttta365080695 365080713 45.15 31.4613.69 Eufind
 
chrUn 248 298231618 298231690 Asn GTT ctttgcatga tgtagctttt0 0 31.05 21.989.07 Eufind
chrUn 78 110568098 110568171 Asn GTT ctgagtttgt atgtagtttt0 0 35.99 20.6515.34 tRNAscan
chrUn 477 316974478 316974413 Asn GTT gccgcacatg gccattttaa0 0 38.42 30.617.81 Eufind
chrUn 476 316980583 316980514 Asn GTT ctgttcccca gatgtttttt0 0 43.05 31.9311.12 Eufind
chrUn 117 163353594 163353667 Asn GTT tcctatgtat catggtgtgc0 0 46.42 37.898.53 Eufind
chrUn 118 163354826 163354899 Asn GTT taaactttat ccaagcattt0 0 48.19 26.0722.12 Both
chrUn 122 170085238 170085311 Asn GTT actttatata cagtgctttc0 0 52.19 29.4422.75 Both
chrUn 37 70138365 70138438 Asn GTT taaatagtgt ctggggtttg0 0 52.42 39.1513.27 Both
chrUn 504 282092641 282092568 Asn GTT ggcacttcca gctcgataac0 0 66.51 48.1418.37 Both
chrUn 245 298223863 298223936 Asn GTT gccgcacaag gccgttttaa0 0 76.29 53.0323.26 Both
chrUn 126 171378014 171378087 Asn GTT ggtgtttcct tttttaatct0 0 76.59 53.3323.26 Both
chrUn 244 298222843 298222916 Asn GTT gccgcacaag gccgttttaa0 0 82.24 58.9723.27 Both
chrUn 478 316973604 316973531 Asn GTT gccgcacaag gccgttttaa0 0 82.24 58.9723.27 Both
chrUn 505 282061856 282061783 Asn GTT tgaacacaca gccattttaa0 0 82.24 58.9723.27 Both
chrUn 92 120077147 120077220 Asn GTT ggataacacc cagttgcttt0 0 82.24 58.9723.27 Both
chrUn 246 298228730 298228803 Asn GTT cagccactca tttgttttga0 0 82.89 59.6223.27 Both
chrUn 267 316977712 316977785 Asn GTT gaagacgccg ctcgcttttt0 0 82.89 59.6223.27 Both
chrUn 269 316979843 316979916 Asn GTT actgccacca cttgcttttt0 0 82.89 59.6223.27 Both
chrUn 474 316985548 316985475 Asn GTT agtgccacca cttacttttt0 0 82.89 59.6223.27 Both
chrUn 95 132154745 132154818 Asn GTT gtacatcctc cagcttcttt0 0 82.89 59.6223.27 Both
chrUn 247 298229035 298229108 Asn GTT ggcactcatg tttgttttga0 0 83.62 60.3623.26 Both
chrUn 268 316978750 316978823 Asn GTT accgccacca atgcattttc0 0 83.62 60.3623.26 Both
chrUn 473 316986577 316986504 Asn GTT actgccacca atgcattttc0 0 83.62 60.3623.26 Both
chrUn 475 316984388 316984315 Asn GTT actgccacca atgcattttc0 0 83.62 60.3623.26 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chrUn 393 389059812 389059741 Asp ATC ctgtacaagt tcacttttaa0 0 65.11 44.7020.41 Both
chrUn 495 299766190 299766124 Asp GTC cgcgttcctc nnnnnnnnnn0 0 35.19 23.2811.91 Both
chrUn 349 391412340 391412411 Asp GTC ctgaccgggc ataccttttt0 0 38.66 23.8314.83 Eufind
chrUn 315 370771563 370771634 Asp GTC ctgaccgggc ataccttttt0 0 41.08 28.1012.98 Eufind
chrUn 460 343024023 343023952 Asp GTC cgtgacgcgt tttatttttt0 0 66.35 45.4620.89 Both
chrUn 128 178536146 178536217 Asp GTC ggacgaaccg tgtctatttt0 0 71.10 46.2124.89 Both
chrUn 129 178537138 178537209 Asp GTC tgtcgttata attgatcttt0 0 71.10 46.2124.89 Both
chrUn 329 386144571 386144642 Asp GTC cctgacgcgt tttctttttt0 0 71.10 46.2124.89 Both
chrUn 339 389140647 389140718 Asp GTC gagcatctgt ttccttttta0 0 71.10 46.2124.89 Both
chrUn 359 395221385 395221456 Asp GTC ggccggcgag tttcttttta0 0 71.10 46.2124.89 Both
chrUn 364 396371411 396371482 Asp GTC catgacgcgt tttctttttt0 0 71.10 46.2124.89 Both
chrUn 385 393475327 393475256 Asp GTC tgcttcctcg taaaatgttt0 0 71.10 46.2124.89 Both
chrUn 390 390836597 390836526 Asp GTC gcagagcaag tttcctttta0 0 71.10 46.2124.89 Both
chrUn 392 389060840 389060769 Asp GTC ctgtgcaagt tcacttttaa0 0 71.10 46.2124.89 Both
chrUn 442 362482159 362482088 Asp GTC catgacgcgt tttctttttt0 0 71.10 46.2124.89 Both
chrUn 445 362475187 362475116 Asp GTC ggccggcgag tttcttttta0 0 71.10 46.2124.89 Both
chrUn 446 362474727 362474656 Asp GTC aaccatcact ttccttttta0 0 71.10 46.2124.89 Both
chrUn 463 343021784 343021713 Asp GTC gcagagcaag tttcctttta0 0 71.10 46.2124.89 Both
chrUn 490 299773400 299773329 Asp GTC gagcatctgt ttccttttta0 0 71.10 46.2124.89 Both
chrUn 492 299772340 299772269 Asp GTC catgacgcgt tttctttttt0 0 71.10 46.2124.89 Both
chrUn 494 299767386 299767315 Asp GTC cgtgacgcgt tttctttttt0 0 71.10 46.2124.89 Both
chrUn 618 149996683 149996612 Asp GTC atacagaaca taagtttttt0 0 71.10 46.2124.89 Both
chrUn 624 141363097 141363026 Asp GTC ctgagcaggt tttcttttaa0 0 71.10 46.2124.89 Both
chrUn 256 303557124 303557195 Asp GTC atctggtcgt acgagatttt0 0 72.92 48.3824.54 Both
chrUn 528 257896844 257896773 Asp GTC gcccaaaatc tggctttgca0 0 72.92 48.3824.54 Both
 
chrUn 680 50043988 50043917 Cys GCA agcagcgggc gctagcataa0 0 65.34 43.3122.03 Both
chrUn 30 50062424 50062495 Cys GCA gtcaagaatt gggttccacc0 0 65.90 49.8516.05 Eufind
chrUn 679 50048927 50048856 Cys GCA cagtgacaga acaggagtca0 0 68.27 46.2422.03 Both
chrUn 32 50118644 50118715 Cys GCA catttgtgtg gtagcttcat0 0 70.72 48.6922.03 Both
chrUn 219 271208623 271208694 Cys GCA accagccagc ctttttgtcc0 0 71.51 52.2719.24 Both
chrUn 29 49167854 49167925 Cys GCA gtccaccgct tgaattatgc0 0 73.54 51.1422.40 Both
chrUn 113 157082941 157083012 Cys GCA ggcattgtgc tcgatgaaca0 0 73.59 51.1322.46 Both
chrUn 31 50080946 50081017 Cys GCA ttcacgtcac cagggtcagt0 0 73.59 51.1322.46 Both
chrUn 677 50112218 50112147 Cys GCA acggcagcat tggtgtcctt0 0 73.59 51.1322.46 Both
chrUn 678 50091714 50091643 Cys GCA gctcacaggt gacacctttt0 0 73.59 51.1322.46 Both
chrUn 295 353415576 353415647 Cys GCA tactgagcgc cgttttccca0 0 77.71 58.4719.24 Both
chrUn 513 271206360 271206289 Cys GCA tctgtacgcc cattttgctt0 0 77.71 58.4719.24 Both
 
chrUn 146 188397121 188397191 Gln CTG nnnnnnnnnn taacttttta0 0 53.61 40.0813.53 Eufind
chrUn 162 208282070 208282141 Gln CTG ccagtttgca tccctttatt0 0 69.97 47.9722.00 Both
chrUn 342 389970860 389970931 Gln CTG gggaagtggt ctttttgaca0 0 70.07 45.4124.66 Both
chrUn 344 389971917 389971988 Gln CTG acagagctgt ctttttgaca0 0 70.07 45.4124.66 Both
chrUn 562 227298599 227298528 Gln CTG gggaagtggt ctttttgaca0 0 70.07 45.4124.66 Both
chrUn 60 95526160 95526231 Gln CTG cgttacgcac tcttattttc0 0 70.90 45.4625.44 Both
chrUn 209 263795472 263795543 Gln CTG gcacgtacaa tccttatgtt0 0 73.65 50.3623.29 Both
chrUn 224 273550655 273550726 Gln CTG ccctacgtcc gcaagtattt0 0 73.65 50.3623.29 Both
chrUn 532 253187041 253186970 Gln CTG cgcttgtact tggattttca0 0 73.65 50.3623.29 Both
chrUn 590 188403463 188403392 Gln CTG acatttacgt gattttgccc0 0 73.65 50.3623.29 Both
chrUn 591 188402977 188402906 Gln CTG tggtatctga taacttttta0 0 73.65 50.3623.29 Both
chrUn 593 188395563 188395492 Gln CTG tggtatctga taactttttg0 0 73.65 50.3623.29 Both
chrUn 707 17055395 17055324 Gln CTG caccatgagg gctaattttg0 0 73.65 50.3623.29 Both
chrUn 343 389971136 389971207 Gln TTG cacttcctgt tctttattct0 0 48.95 39.179.78 Eufind
chrUn 97 133052436 133052507 Gln TTG acttgttcca cagcctttag0 0 62.26 49.5912.67 Both
chrUn 594 188395149 188395078 Gln TTG gctaagaagt aatcttttaa0 0 66.20 46.0420.16 Both
chrUn 145 188396451 188396522 Gln TTG gctaagaaat ggttttgtcc0 0 67.85 47.7020.15 Both
chrUn 592 188402567 188402496 Gln TTG gctaagaaat ggttttgtcc0 0 67.85 47.7020.15 Both
chrUn 345 389972193 389972264 Gln TTG aacttgctgt tctttattcn0 0 70.17 45.5024.67 Both
chrUn 560 227465636 227465565 Gln TTG aacttcctgc tctttattct0 0 70.17 45.5024.67 Both
chrUn 179 230119428 230119499 Gln TTG atgcgtaaca cgtccttttt0 0 73.77 50.8322.94 Both
chrUn 586 190676997 190676926 Gln TTG gcggccgtat catccttttc0 0 73.77 50.8322.94 Both
 
chrUn 277 323425954 323426026 Glu CTC nnnnnnnnnn gttttacttc0 0 43.26 29.1314.13 Eufind
chrUn 394 388544039 388543968 Glu CTC cacaaacccg cagttttact0 0 61.78 42.8518.93 Both
chrUn 697 28363697 28363626 Glu CTC caccattcag cttagaatta0 0 67.50 49.0618.44 Both
chrUn 278 323427558 323427629 Glu CTC agctttgaag ctcgttttat0 0 74.53 51.8622.67 Both
chrUn 279 323428020 323428091 Glu CTC cacgcacatc ctcgttttat0 0 74.53 51.8622.67 Both
chrUn 280 323428843 323428914 Glu CTC cacgcacatc cgcgttttac0 0 74.53 51.8622.67 Both
chrUn 395 388542434 388542363 Glu CTC agctttgaag ctcgttttat0 0 74.53 51.8622.67 Both
chrUn 396 388541942 388541871 Glu CTC cacgcacatc cgcgttttat0 0 74.53 51.8622.67 Both
chrUn 397 388540967 388540896 Glu CTC tatgcacatc cgcgttttat0 0 74.53 51.8622.67 Both
chrUn 488 303550786 303550715 Glu CTC actgcgcatc cgtattttgt0 0 74.53 51.8622.67 Both
chrUn 51 84900882 84900953 Glu CTC tgttggtacc cttgccattt0 0 74.53 51.8622.67 Both
chrUn 661 84898818 84898747 Glu CTC gctacacagg ggcttttgga0 0 74.53 51.8622.67 Both
chrUn 699 27785809 27785738 Glu CTC tccggaagtc caacttctcc0 0 75.27 49.5225.75 Both
chrUn 447 360233987 360233916 Glu CTC cccactccac cgtattttta0 0 76.61 53.9422.67 Both
chrUn 47 84809501 84809572 Glu CTC gcatgatgtg ctacttttct0 0 76.61 53.9422.67 Both
chrUn 48 84849807 84849878 Glu CTC tgcactcaga cacgtctttt0 0 76.61 53.9422.67 Both
chrUn 507 277378203 277378132 Glu CTC taactcgaag cttagctttt0 0 76.61 53.9422.67 Both
chrUn 508 277377113 277377042 Glu CTC accgctaccg cttcactttt0 0 76.61 53.9422.67 Both
chrUn 522 261349654 261349583 Glu CTC ctgaagcact cttaactttt0 0 76.61 53.9422.67 Both
chrUn 614 160233136 160233065 Glu CTC acacatgcgt cttgttttgg0 0 76.61 53.9422.67 Both
chrUn 63 96317483 96317554 Glu TTC tatgaagtgg cttaaacata0 0 23.33 14.159.18 Eufind
chrUn 67 96318763 96318834 Glu TTC tatgaagtgc cttaaacata0 0 23.33 14.159.18 Eufind
chrUn 228 276935383 276935453 Glu TTC accctggcag caatctcaga0 0 31.46 22.578.89 Eufind
chrUn 56 87472710 87472781 Glu TTC ggctctccac ttcctctttc0 0 58.04 40.9817.06 Eufind
chrUn 65 96318226 96318297 Glu TTC catccagtgg tttaaacaca0 0 66.10 47.6918.41 Both
chrUn 139 185753596 185753667 Glu TTC cctccagggc tccccatttt0 0 67.13 43.8123.32 Both
chrUn 74 106764381 106764452 Glu TTC cctacagcgc tctagctttt0 0 68.86 45.5423.32 Both
chrUn 150 193993250 193993321 Glu TTC gcaggagggc caccttttta0 0 71.18 47.8623.32 Both
chrUn 52 85012166 85012237 Glu TTC cagtgtcatc gttgcttttt0 0 71.79 48.4723.32 Both
chrUn 287 337182932 337183003 Glu TTC cctcacagcc cgcgaccttt0 0 72.92 49.6023.32 Both
chrUn 565 221007986 221007915 Glu TTC ccagtcagtg cgataccttt0 0 72.92 49.6023.32 Both
chrUn 177 229642933 229643004 Glu TTC ttgctcgcag ctcacttttg0 0 75.00 51.6923.31 Both
chrUn 601 186245751 186245680 Glu TTC gattgacagg cgatattttt0 0 75.00 51.6923.31 Both
chrUn 659 94954181 94954110 Glu TTC ttcgcatatt cgatatgttt0 0 75.00 51.6923.31 Both
chrUn 9 20629203 20629274 Glu TTC gacttcgagg ctaagtcttt0 0 75.00 51.6923.31 Both
 
chrUn 506 280594400 280594329 Gly CCC gtgatattgg tagggggcat0 0 31.74 25.266.48 Both
chrUn 152 204225632 204225702 Gly CCC ttagtcatgg cctgttttcc0 0 76.98 51.0525.93 Both
chrUn 696 28794483 28794413 Gly CCC tgccctgaac cgcgttttgc0 0 76.98 51.0525.93 Both
chrUn 8 15215480 15215550 Gly CCC ttcaaaaaga gctctttcga0 0 78.43 52.5025.93 Both
chrUn 348 391410121 391410191 Gly GCC cgcttttcaa aacttccttt0 0 66.33 46.2820.05 Both
chrUn 350 391413121 391413191 Gly GCC cgcttttcaa aacttccttt0 0 66.33 46.2820.05 Both
chrUn 328 382158669 382158739 Gly GCC cccaatttac taacattttt0 0 77.30 55.3421.96 Both
chrUn 375 399023024 399022954 Gly GCC cccaatttac taacattttt0 0 77.30 55.3421.96 Both
chrUn 309 363570503 363570573 Gly GCC gcttatttat acatgttttt0 0 81.62 61.5720.05 Both
chrUn 332 386776797 386776867 Gly GCC tcctatttat aatagttttt0 0 81.62 61.5720.05 Both
chrUn 333 386877743 386877813 Gly GCC cccaatttat aaacattttt0 0 81.62 61.5720.05 Both
chrUn 352 391837054 391837124 Gly GCC gcctatttat aattgttttt0 0 81.62 61.5720.05 Both
chrUn 354 392924077 392924147 Gly GCC tcctatttat aatagttttt0 0 81.62 61.5720.05 Both
chrUn 35 61506918 61506988 Gly GCC acctgtttat aattgttttt0 0 81.62 61.5720.05 Both
chrUn 366 396578991 396579061 Gly GCC tcctatttat aattgttttt0 0 81.62 61.5720.05 Both
chrUn 367 398351509 398351579 Gly GCC gcctatttat aattgttttt0 0 81.62 61.5720.05 Both
chrUn 391 390035855 390035785 Gly GCC tcctatttat aatagttttt0 0 81.62 61.5720.05 Both
chrUn 41 79938509 79938579 Gly GCC gcctatttat aattgttttt0 0 81.62 61.5720.05 Both
chrUn 419 377266566 377266496 Gly GCC gcctatttat aattgttttt0 0 81.62 61.5720.05 Both
chrUn 42 79953410 79953480 Gly GCC gcctatttat aattgttttt0 0 81.62 61.5720.05 Both
chrUn 431 369026776 369026706 Gly GCC gcctatttat aattgttttt0 0 81.62 61.5720.05 Both
chrUn 634 124402998 124402928 Gly GCC cccaatttat aaacattttt0 0 81.62 61.5720.05 Both
chrUn 417 379702235 379702164 Gly TCC acccctggta gattcttttc0 0 47.81 34.6313.18 Both
chrUn 382 397123665 397123595 Gly TCC cacgtgcgta tgacgtcctg0 0 63.38 45.8617.52 Eufind
chrUn 326 377022437 377022508 Gly TCC tgaccgcgtc ttcaaattct0 0 70.39 50.0520.34 Both
chrUn 346 390809100 390809171 Gly TCC tgaccgcgtc ttcaaattct0 0 70.39 50.0520.34 Both
chrUn 282 327080794 327080865 Gly TCC tgaccgcatc ttcaaattct0 0 73.04 52.0321.01 Both
chrUn 347 390811906 390811977 Gly TCC tgaccgcgtc ttcaaattct0 0 73.04 52.0321.01 Both
chrUn 361 395829587 395829658 Gly TCC tgaccgcgtc ttcaaattcc0 0 73.04 52.0321.01 Both
chrUn 418 377638676 377638605 Gly TCC tgaccgcgtc ttcaaattca0 0 73.04 52.0321.01 Both
chrUn 44 80210399 80210470 Gly TCC agtacgcgtt tttgtttttc0 0 73.04 52.0321.01 Both
chrUn 567 215952511 215952440 Gly TCC gttcgtcgta gattcttttc0 0 73.04 52.0321.01 Both
chrUn 252 301848149 301848220 Gly TCC cccatcagaa gaaatccttt0 0 76.83 56.4020.43 Both
chrUn 284 336498576 336498647 Gly TCC cacgtgcgta tgacgtcctg0 0 76.83 56.4020.43 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chrUn 535 243630449 243630377 His ATG cacctctcag aggtttgatg0 0 34.95 28.546.41 Both
chrUn 272 318790689 318790778 His ATG ggaccaggag attctatgtt318790725 318790733 39.76 20.4219.34 Eufind
chrUn 457 352245881 352245810 His GTG tagttggcca gcttttgaag0 0 58.22 33.1225.10 Both
chrUn 684 43891982 43891911 His GTG gtccccacca aggtagaaag0 0 61.42 40.9320.49 Both
chrUn 456 352246433 352246362 His GTG cacctggcca gcatttactt0 0 62.30 36.2226.08 Both
chrUn 399 386957219 386957148 His GTG gtccccacca gggtagaaag0 0 63.23 37.4225.81 Both
chrUn 400 386956748 386956677 His GTG gtcccaacca gcgtgtagca0 0 63.23 37.4225.81 Both
chrUn 425 371045723 371045652 His GTG gtcccaacca gcgtggagca0 0 63.23 37.4225.81 Both
chrUn 426 371045233 371045162 His GTG ttcctgacca gggtagaaag0 0 63.23 37.4225.81 Both
chrUn 427 371044705 371044634 His GTG cacccaacca cggtagaaag0 0 63.23 37.4225.81 Both
chrUn 428 371044440 371044369 His GTG gtccccacca gggtagaaag0 0 63.23 37.4225.81 Both
chrUn 429 371038242 371038171 His GTG gtccccacca gggtagaaag0 0 63.23 37.4225.81 Both
chrUn 685 43891427 43891356 His GTG gtccccacca gggtagaaag0 0 63.23 37.4225.81 Both
chrUn 686 43890956 43890885 His GTG gtcccaacca gcgtggagca0 0 63.23 37.4225.81 Both
chrUn 717 2932763 2932692 His GTG atcgtagctc ttgtgagaca0 0 63.65 37.2326.42 Both
chrUn 119 166643173 166643244 His GTG ccagtagctc gggttaaaac0 0 64.03 37.9626.07 Both
chrUn 455 352246875 352246804 His GTG gtgttagcca aagggtccgt0 0 64.03 37.9626.07 Both
chrUn 526 258644630 258644559 His GTG ctggtagctc gggattaatc0 0 64.03 37.9626.07 Both
chrUn 564 222982175 222982104 His GTG atcgtagctc ttgtttaaca0 0 65.73 39.3126.42 Both
chrUn 1 2862021 2862092 His GTG ccggtagctc gggataaatc0 0 66.12 40.0426.08 Both
chrUn 205 256828635 256828706 His GTG cccgcggctc acagtcacat0 0 66.12 40.0426.08 Both
chrUn 2 3123624 3123695 His GTG tcagcggctc gcgccttttg0 0 66.12 40.0426.08 Both
 
chrUn 638 118216998 118216925 Ile AAT ttctgttttt tgaaggctct0 0 50.12 44.895.23 Both
chrUn 668 73267016 73266943 Ile AAT tttcacctgt ttaactttag0 0 78.21 59.7218.49 Both
chrUn 181 237244138 237244211 Ile AAT tccacagcat acttttaagt0 0 80.66 62.1718.49 Both
chrUn 38 74973319 74973392 Ile AAT gggcgctcgt cttggttttt0 0 80.66 62.1718.49 Both
chrUn 424 372120310 372120237 Ile AAT gttccacagt caccgcgatt0 0 80.66 62.1718.49 Both
chrUn 481 315327150 315327077 Ile AAT gttccacagc caccgcgatt0 0 80.66 62.1718.49 Both
chrUn 576 208857373 208857300 Ile AAT gtcgctccgt ctactttctt0 0 80.66 62.1718.49 Both
chrUn 58 90866103 90866176 Ile AAT cgatgaacat cacccttttt0 0 80.66 62.1718.49 Both
chrUn 59 93729107 93729180 Ile AAT ccagtcacgt tgtgcttttt0 0 80.66 62.1718.49 Both
chrUn 667 74973685 74973612 Ile AAT tgagtcccac ggtcaagttn0 0 80.66 62.1718.49 Both
chrUn 669 72113658 72113585 Ile AAT gcctgcacgt ttacctttag0 0 80.66 62.1718.49 Both
chrUn 96 132240583 132240656 Ile AAT cgctcaatat taggcttttg0 0 80.66 62.1718.49 Both
chrUn 605 181052920 181052848 Ile TAT tcctcaagga gcaaggcttc0 0 43.50 27.6815.82 Both
chrUn 6 14416782 14416875 Ile TAT ggtgttgcgc atgtccttta14416820 14416839 66.29 38.0928.20 Both
chrUn 709 14440442 14440349 Ile TAT gcaatcagca gcttaacttt14440404 14440385 64.19 38.9025.29 Both
chrUn 283 328944430 328944523 Ile TAT tgcctgtcaa gagccgaaag328944468 328944487 65.79 37.6028.19 Both
chrUn 299 353970978 353971071 Ile TAT gtcctgtagg ctatttttac353971016 353971035 67.74 39.5528.19 Both
chrUn 71 99732909 99733002 Ile TAT gactgcgcgc acgtttttaa99732947 99732966 67.10 38.9128.19 Both
 
chrUn 581 205622086 205622003 Leu AAG ttttcttgtt taaggagctt0 0 43.87 28.6415.23 Eufind
chrUn 500 292825235 292825154 Leu AAG ccctcaccca ggttgagttt0 0 60.43 45.7714.66 Both
chrUn 155 205668501 205668582 Leu AAG tgtttgttgt taaggagcgt0 0 63.91 41.1522.76 Both
chrUn 154 205615663 205615744 Leu AAG ctcacctgta ttttggcagc0 0 63.93 44.2519.68 Both
chrUn 158 205736503 205736584 Leu AAG gcactctgga tcagcaaggt0 0 67.77 46.1321.64 Both
chrUn 453 353418769 353418688 Leu AAG ggtgccgtcc cagatgtttt0 0 69.34 49.6819.66 Both
chrUn 240 294274286 294274367 Leu AAG cgctcctcag gaaacttttc0 0 69.84 50.1619.68 Both
chrUn 628 132250172 132250091 Leu AAG atggccccag ctaaaatttt0 0 69.84 50.1619.68 Both
chrUn 111 155685016 155685097 Leu AAG catcacatcc ggttactttt0 0 71.96 50.5821.38 Both
chrUn 311 367033723 367033804 Leu AAG gtactccact tgtttttttt0 0 71.96 50.5821.38 Both
chrUn 703 21898713 21898632 Leu AAG gacgacataa attgtttttt0 0 71.96 50.5821.38 Both
chrUn 213 264529538 264529648 Leu CAA gtcaggatgt taaatttctt264529576 264529602 62.57 41.7120.86 Both
chrUn 515 264543904 264543794 Leu CAA tacgtatcgt ctaccttttt264543866 264543840 66.76 45.8220.94 Both
chrUn 486 306573139 306573029 Leu CAA acgccgctgt gtgagctttt306573101 306573075 62.78 37.5325.25 Both
chrUn 20 31852150 31852264 Leu CAA agaacgtgtc ctactttttc31852188 31852218 62.76 41.1121.65 Both
chrUn 693 31852723 31852613 Leu CAA gctcgcagtt atgcttttat31852685 31852659 66.71 45.7720.94 Both
chrUn 21 31852833 31852946 Leu CAA tgtcgtcgta tacgttttac31852871 31852900 65.19 42.9422.25 Both
chrUn 716 5619154 5619044 Leu CAA tcgtcgttgt ctatcctttt5619116 5619090 55.16 32.7322.43 Both
chrUn 36 69020695 69020806 Leu CAA tgccttcatg agctttttag69020733 69020760 60.06 42.7717.29 Both
chrUn 53 85439494 85439602 Leu CAA gttttcacct agtgcatttt85439532 85439556 63.86 42.2121.65 Both
chrUn 602 185034455 185034372 Leu CAG gtcaccatgt gatttgtttt0 0 44.24 25.7318.51 Eufind
chrUn 115 162541432 162541514 Leu CAG ggcaaccaat gcgcaagctt0 0 61.98 35.0226.96 Both
chrUn 123 170097450 170097532 Leu CAG tgcacatcgt ttcttgcctg0 0 62.84 34.0928.75 Both
chrUn 124 170098061 170098143 Leu CAG tgcacatcgt ttcttgcctg0 0 62.84 34.0928.75 Both
chrUn 207 259153778 259153860 Leu CAG ggtcacatgc acctctttag0 0 66.72 41.6225.10 Both
chrUn 452 353756629 353756547 Leu CAG gaacgagaaa ttattattat0 0 70.91 41.8929.02 Both
chrUn 301 355980821 355980903 Leu CAG tgggttccat gtttagtagc0 0 76.82 47.8029.02 Both
chrUn 312 368018587 368018669 Leu CAG tgggttccat gtttagtagc0 0 76.82 47.8029.02 Both
chrUn 103 142797290 142797372 Leu CAG actactagct tcaatctttt0 0 77.82 48.8029.02 Both
chrUn 165 211142909 211142991 Leu CAG atttcccact attcactttt0 0 77.82 48.8029.02 Both
chrUn 166 211149986 211150068 Leu CAG gtttcccact attcactttt0 0 77.82 48.8029.02 Both
chrUn 297 353728552 353728634 Leu CAG gaacgagaaa ttattatttt0 0 77.82 48.8029.02 Both
chrUn 298 353729412 353729494 Leu CAG ggcgttctat ttattttttt0 0 77.82 48.8029.02 Both
chrUn 302 355981353 355981435 Leu CAG tgggttccat ttttagtagc0 0 77.82 48.8029.02 Both
chrUn 318 373142931 373143013 Leu CAG gatcgagaaa ttattattat0 0 77.82 48.8029.02 Both
chrUn 323 375498757 375498839 Leu CAG gaacgagaaa ttattatttt0 0 77.82 48.8029.02 Both
chrUn 324 375499616 375499698 Leu CAG ggcgttctat ttattttttt0 0 77.82 48.8029.02 Both
chrUn 432 367256812 367256730 Leu CAG tgggttccat ttttagtagc0 0 77.82 48.8029.02 Both
chrUn 466 340110694 340110612 Leu CAG tgggttccat ttttagtagc0 0 77.82 48.8029.02 Both
chrUn 570 215647868 215647786 Leu CAG gaacgagaaa ttattatttt0 0 77.82 48.8029.02 Both
chrUn 571 215646911 215646829 Leu CAG ggcgttctat ttattttttt0 0 77.82 48.8029.02 Both
chrM 1 2756 2828 Leu TAA aacatgacat atgactacaa0 0 31.90 14.1617.74 Eufind
chrUn 306 358819697 358819769 Leu TAA aacatgacat atgactacaa0 0 31.90 14.1617.74 Eufind
chrUn 183 239049961 239050042 Leu TAA ttagtcagta tatgttttta0 0 58.24 37.9020.34 Both
chrUn 265 311969118 311969200 Leu TAA ggcctttcgt gagacctgtc0 0 74.13 41.1532.98 Both
chrUn 243 298137555 298137637 Leu TAA agctacacgg ttcctgtttt0 0 74.43 46.2628.17 Both
chrUn 242 298137232 298137314 Leu TAA cataaaccca ttcctctaaa0 0 76.30 46.1630.14 Both
chrUn 433 366238775 366238693 Leu TAA cgtcatctat ttaattttaa0 0 81.03 49.4531.58 Both
chrUn 308 363461078 363461159 Leu TAG gaagccggta ttaatttttg0 0 63.60 41.0122.59 Both
chrUn 612 163337473 163337392 Leu TAG aaatggagtg cagtttggcc0 0 65.14 41.7723.37 Both
chrUn 225 273931716 273931797 Leu TAG ggccgtcaca gaacattttt0 0 68.14 45.5422.60 Both
chrUn 613 161811698 161811616 Leu TAG ctctgtgtgt tcctgaactt0 0 71.48 42.7328.75 Both
 
chrUn 226 274706499 274706571 Lys CTT ttacgtcatc ccagtttcgt0 0 61.22 54.207.02 Eufind
chrUn 595 186589188 186589116 Lys CTT ggggaaaagt atatgttttc0 0 64.81 46.8118.00 Eufind
chrUn 178 229851469 229851542 Lys CTT gaccagagaa tcacacaaaa0 0 70.78 47.3823.40 Both
chrUn 140 186198581 186198653 Lys CTT ctccagtcaa gagccttttg0 0 74.85 59.1215.73 Both
chrUn 110 155672810 155672882 Lys CTT aaagctccaa cttacaactt0 0 80.47 57.8122.66 Both
chrUn 18 31470508 31470580 Lys CTT ggtattacaa ctgctatttt0 0 80.47 57.8122.66 Both
chrUn 19 31838697 31838769 Lys CTT tcagcaccca ctgctgtttt0 0 80.47 57.8122.66 Both
chrUn 270 317089905 317089977 Lys CTT tcgctcccgt ctgcatcttt0 0 80.47 57.8122.66 Both
chrUn 436 364294617 364294545 Lys CTT ggggaaaaat atatgttttc0 0 80.47 57.8122.66 Both
chrUn 464 340785767 340785695 Lys CTT ccaaggaaaa atatgttttc0 0 80.47 57.8122.66 Both
chrUn 483 311227672 311227600 Lys CTT gtgctcctca actccctatt0 0 80.47 57.8122.66 Both
chrUn 530 254533586 254533514 Lys CTT gggcctcaca ctgacctttt0 0 80.47 57.8122.66 Both
chrUn 547 234914581 234914509 Lys CTT ctaaccatca ctaccttatt0 0 80.47 57.8122.66 Both
chrUn 597 186588134 186588062 Lys CTT ggggaaaaat atatgttttc0 0 80.47 57.8122.66 Both
chrUn 599 186587626 186587554 Lys CTT ggggaagaat atatgttttc0 0 80.47 57.8122.66 Both
chrUn 692 31855686 31855614 Lys CTT gtggaggcaa ctgatctttt0 0 80.47 57.8122.66 Both
chrUn 694 31062573 31062501 Lys CTT atcctaatgt ctgctgtgat0 0 80.47 57.8122.66 Both
chrUn 91 120076901 120076973 Lys CTT gtgattcatg ctgctttttt0 0 80.47 57.8122.66 Both
chrUn 615 157798141 157798068 Lys TTT agccgaaccc tgtctctctt0 0 28.41 11.5216.89 Eufind
chrUn 175 228548752 228548825 Lys TTT gcaactgcaa actaatatct0 0 45.37 36.059.32 Eufind
chrUn 654 100083826 100083754 Lys TTT ctttcgctca catctttgta0 0 63.95 46.2917.66 Both
chrUn 596 186588983 186588911 Lys TTT ttgaacttgt tgatgctttc0 0 67.18 44.2422.94 Both
chrUn 465 340785563 340785491 Lys TTT ttgcaaacat tgatgctttc0 0 72.98 50.0422.94 Both
chrUn 600 186587421 186587349 Lys TTT ttgtaattgt tgatatgttc0 0 72.98 50.0422.94 Both
chrUn 598 186587929 186587857 Lys TTT ttgaacttgt tgatgctttc0 0 74.62 52.9021.72 Both
chrUn 316 370964463 370964535 Lys TTT gtgctgcaga aacatctttc0 0 76.16 58.5117.65 Both
chrUn 683 46591828 46591756 Lys TTT gctcacaaga tcggtccttt0 0 76.17 59.5216.65 Both
chrUn 437 364294412 364294340 Lys TTT ttgaccttgt tgatgctttc0 0 76.40 53.4622.94 Both
chrUn 439 364289709 364289637 Lys TTT ttgcccttgt tgatgctttc0 0 76.40 53.4622.94 Both
chrUn 435 364294920 364294848 Lys TTT gggaaaaaat tgatgctttc0 0 76.97 55.6421.33 Both
chrUn 438 364294122 364294050 Lys TTT gggaaaaaat tgatgctnnn0 0 76.97 55.6421.33 Both
chrUn 651 113063197 113063125 Lys TTT ttgctcaagg tcagcatttt0 0 79.18 61.6817.50 Both
chrUn 544 237351470 237351398 Lys TTT cttgctcaga ttaatgtttt0 0 83.31 61.9521.36 Both
chrUn 23 38176396 38176468 Lys TTT cttttgcaga ctactttttt0 0 83.80 62.7821.02 Both
chrUn 33 58740817 58740889 Lys TTT caactttcga cacagccttt0 0 83.80 62.7821.02 Both
chrUn 34 58741334 58741406 Lys TTT gaccaacaga ctacttttta0 0 83.80 62.7821.02 Both
chrUn 75 106943492 106943564 Lys TTT caccgtcaga tcatcttttt0 0 83.80 62.7821.02 Both
chrUn 83 113062736 113062808 Lys TTT caccgtgagc caatctactt0 0 83.80 62.7821.02 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chrUn 237 291664463 291664534 Met CAT gctctacaca taagcatttg0 0 61.88 33.8728.01 Both
chrUn 112 155839625 155839696 Met CAT ctcccgggtc aagactttgg0 0 63.50 35.4928.01 Both
chrUn 200 244207168 244207239 Met CAT cttgtcatgt gcatttatat0 0 65.19 37.9527.24 Both
chrUn 320 373271310 373271381 Met CAT aggactccag ggccttttct0 0 65.51 37.5028.01 Both
chrUn 275 323191502 323191575 Met CAT ctctttaggt ctgtgctttt0 0 66.53 54.2812.25 Both
chrUn 413 380831762 380831689 Met CAT ctctttaggt ctgtgctttt0 0 66.53 54.2812.25 Both
chrUn 163 209959628 209959699 Met CAT agctctcatg tttccattaa0 0 66.89 38.8828.01 Both
chrUn 371 400400789 400400860 Met CAT agctctcatg gcttgagcgt0 0 66.89 38.8828.01 Both
chrUn 372 400401246 400401317 Met CAT agctctcatg gcttgagcgt0 0 66.89 38.8828.01 Both
chrUn 373 400401716 400401787 Met CAT agctctcatg gcttgagcgt0 0 66.89 38.8828.01 Both
chrUn 374 400402173 400402244 Met CAT agctctcatg tttccattaa0 0 66.89 38.8828.01 Both
chrUn 421 373268831 373268760 Met CAT aagacaatag ggccttttat0 0 66.89 38.8828.01 Both
chrUn 223 272539231 272539302 Met CAT caaaagcgta aaagtttcat0 0 67.60 39.5928.01 Both
chrUn 131 178687852 178687923 Met CAT ccaacagccg acatattttt0 0 68.98 40.9628.02 Both
chrUn 257 306469861 306469932 Met CAT cctgctgtcc tcagcttttc0 0 68.98 40.9628.02 Both
chrUn 258 306516636 306516707 Met CAT ataggtgtcc tcagcttttg0 0 68.98 40.9628.02 Both
chrUn 319 373270184 373270255 Met CAT ggaccctgtg ggccttttct0 0 68.98 40.9628.02 Both
chrUn 511 273552772 273552701 Met CAT agttaaaatt agaaattttg0 0 68.98 40.9628.02 Both
chrUn 512 273552618 273552547 Met CAT gtgtacagta gcattttcaa0 0 68.98 40.9628.02 Both
chrUn 635 121798415 121798344 Met CAT tgaacgcgtg actttttttt0 0 68.98 40.9628.02 Both
chrUn 673 63434586 63434515 Met CAT gatgttagta gcattttcag0 0 68.98 40.9628.02 Both
chrUn 674 61234056 61233985 Met CAT ggggtttgtc ggccttttat0 0 68.98 40.9628.02 Both
chrUn 675 61228349 61228278 Met CAT cgagcctgtc gaatttataa0 0 68.98 40.9628.02 Both
chrUn 676 61217712 61217641 Met CAT tgttactgtg agcgctttta0 0 68.98 40.9628.02 Both
chrUn 704 21877114 21877043 Met CAT cccataaagc ataatctttt0 0 68.98 40.9628.02 Both
chrUn 72 106100628 106100699 Met CAT gttgttggac atgctgcttt0 0 68.98 40.9628.02 Both
chrUn 73 106100859 106100930 Met CAT cagagcatgt acagtgttaa0 0 68.98 40.9628.02 Both
chrUn 88 119946585 119946657 Met CAT ttctacggaa cttctctttt0 0 69.21 53.3215.89 Both
chrUn 636 119415639 119415567 Met CAT cagcttcgca gccttttatt0 0 71.01 49.5821.43 Both
chrUn 45 80479859 80479931 Met CAT cacacacgga acagcttttt0 0 74.91 54.5520.36 Both
chrUn 46 80482087 80482159 Met CAT agccacacag ctgccttttg0 0 74.91 54.5520.36 Both
chrUn 582 201222271 201222199 Met CAT gggctccaca gctgactttt0 0 74.91 54.5520.36 Both
chrUn 660 90854337 90854265 Met CAT gtacaacatc ggttattttt0 0 74.91 54.5520.36 Both
chrUn 84 114427793 114427865 Met CAT tggtctcaga gttgttttat0 0 74.91 54.5520.36 Both
chrUn 89 119949351 119949423 Met CAT ctctacggaa ctagcttttt0 0 74.91 54.5520.36 Both
 
chrUn 579 207909079 207909007 Phe GAA agacaaatgt acaggtccat0 0 48.38 25.4022.98 Both
chrUn 671 66546440 66546368 Phe GAA ccagctcctg ttttgaccgt0 0 51.61 42.249.37 Eufind
chrUn 157 205726561 205726633 Phe GAA ggtcacatgt gctctggagc0 0 53.79 44.699.10 Eufind
chrUn 577 207910233 207910161 Phe GAA agacaaatgt acaggtccat0 0 61.43 38.2923.14 Both
chrUn 578 207909656 207909584 Phe GAA agacaaatgt acaggtccat0 0 61.43 38.2923.14 Both
chrUn 143 188362078 188362151 Phe GAA gccgtaacga tcgtggtgaa0 0 77.14 55.5321.61 Both
chrUn 566 217077246 217077174 Phe GAA tgcctaacaa ttgttaggtt0 0 81.46 58.7822.68 Both
chrUn 198 242654256 242654328 Phe GAA tagtacggta ttttcctgcc0 0 82.38 60.7621.62 Both
chrUn 580 205709613 205709541 Phe GAA tgtcacatgt gtacatggtg0 0 82.45 60.8421.61 Both
chrUn 144 188394836 188394908 Phe GAA cagcgcacgg ttagggctta0 0 83.94 62.0821.86 Both
chrUn 120 166645136 166645208 Phe GAA gttcttatcc ttttgctgac0 0 84.19 62.5821.61 Both
chrUn 159 207135164 207135236 Phe GAA gtcccaacat ttgaggtggg0 0 84.19 62.5821.61 Both
chrUn 196 240710228 240710300 Phe GAA tggtacggta ttttgttgta0 0 84.19 62.5821.61 Both
chrUn 292 353153147 353153219 Phe GAA aggtacggta ttgaggtgga0 0 84.19 62.5821.61 Both
chrUn 293 353154658 353154730 Phe GAA ttcccgacat ttgaggtggg0 0 84.19 62.5821.61 Both
chrUn 330 386306251 386306323 Phe GAA gtcccgacat ttgaggtggg0 0 84.19 62.5821.61 Both
chrUn 331 386310533 386310605 Phe GAA gtcccgacat ttgaggtggg0 0 84.19 62.5821.61 Both
chrUn 380 397804132 397804060 Phe GAA ttcccgacat ttgaggtggg0 0 84.19 62.5821.61 Both
chrUn 383 394295347 394295275 Phe GAA ttctacggta ttttgccaaa0 0 84.19 62.5821.61 Both
chrUn 536 242660412 242660340 Phe GAA tagtacggta ttttgccgaa0 0 84.19 62.5821.61 Both
 
chrUn 66 96318533 96318604 Pro AGG gccaagcgaa ttagatgagc0 0 67.99 45.9322.06 tRNAscan
chrUn 62 96317253 96317324 Pro AGG gccaagcgaa ttacatgagc0 0 70.40 48.3422.06 Both
chrUn 251 301847690 301847761 Pro AGG gccgccgtta ttattttctt0 0 75.92 53.8522.07 Both
chrUn 264 310920791 310920862 Pro AGG ccgttttcgt aattaccttt0 0 75.92 53.8522.07 Both
chrUn 4 7566984 7567055 Pro AGG gctcgtaatc tcttttaaat0 0 75.92 53.8522.07 Both
chrUn 501 292409655 292409584 Pro AGG cacgacgact tccttttcag0 0 75.92 53.8522.07 Both
chrUn 509 276241041 276240970 Pro AGG tgtgcatcat tgttttcgtg0 0 75.92 53.8522.07 Both
chrUn 548 233514695 233514624 Pro AGG ttgtcttcgt tctttttaca0 0 75.92 53.8522.07 Both
chrUn 549 233514107 233514036 Pro AGG gtcttgttat tcagttttga0 0 75.92 53.8522.07 Both
chrUn 714 7580240 7580169 Pro AGG tattgagcgt tcttttgcga0 0 75.92 53.8522.07 Both
chrUn 698 28363370 28363299 Pro CGG gtcataagaa ttaagttgag0 0 55.66 45.0210.64 tRNAscan
chrUn 11 27495610 27495681 Pro CGG gagatttcag cgttatcaga0 0 60.74 49.0511.69 Both
chrUn 250 299907764 299907835 Pro CGG ttcacgctgt tcagcgcttc0 0 74.48 52.4222.06 Both
chrUn 239 292409286 292409357 Pro CGG gatctgttca atttttttcc0 0 76.52 54.4622.06 Both
chrUn 484 307931386 307931315 Pro CGG gtgctcgtaa tctctatttc0 0 76.52 54.4622.06 Both
chrUn 632 125401635 125401564 Pro CGG cccataacgt tttaagtcag0 0 76.52 54.4622.06 Both
chrUn 656 97313452 97313381 Pro TGG actgacatga tcaaagcttt0 0 38.06 28.429.64 tRNAscan
chrUn 64 96317791 96317862 Pro TGG gccaaacgaa tggagttgag0 0 68.23 46.1722.06 tRNAscan
chrUn 68 96319070 96319141 Pro TGG gccaaacgaa tggagttgag0 0 68.23 46.1722.06 tRNAscan
chrUn 102 139863387 139863458 Pro TGG gcttcatcat tccttttttt0 0 76.15 54.0922.06 Both
chrUn 174 228250676 228250747 Pro TGG gtactagcgc aatttttctt0 0 76.15 54.0922.06 Both
chrUn 706 17899519 17899448 Pro TGG cgatcggtgt tacttttaca0 0 76.15 54.0922.06 Both
chrUn 90 119994517 119994588 Pro TGG ctctgcaggc tcacctcttg0 0 76.15 54.0922.06 Both
 
chrUn 534 246050899 246050827 Pseudo ??? gagttagggc gattggggac0 0 20.31 36.26-15.95 Eufind
chrUn 554 231165399 231165328 Pseudo ??? tccacctctc gaggctgggg0 0 20.40 32.15-11.75 Eufind
chrUn 606 176985983 176985911 Pseudo ??? atccaggggc gattggggac0 0 20.45 33.69-13.24 Eufind
chrUn 54 86636263 86636335 Pseudo ??? tgtatggggc gactgtgtgg0 0 20.91 34.08-13.17 Eufind
chrUn 362 396057797 396057868 Pseudo ??? tcgaaggggc gattggggac0 0 21.60 28.70-7.10 Eufind
chrUn 201 245854479 245854551 Pseudo ??? atatgaaggc gaggctgggg0 0 21.87 35.15-13.28 Eufind
chrUn 294 353333849 353333921 Pseudo ??? catgttgggc gaggctgggg0 0 21.91 33.55-11.64 Eufind
chrUn 487 304401833 304401761 Pseudo ??? cgtccaaggc gaggactttc0 0 21.97 28.12-6.15 Eufind
chrUn 16 28660211 28660281 Pseudo ??? agttaagggc gattggggac0 0 22.35 35.60-13.25 Eufind
chrUn 170 214000303 214000375 Pseudo ??? ctaagggcgt gattggggac0 0 22.39 36.73-14.34 Eufind
chrUn 708 15954947 15954875 Pseudo ??? acactggggc gaggctgggg0 0 22.98 33.05-10.07 Eufind
chrUn 40 78075862 78075934 Pseudo ??? taacaggggt gaggctgggg0 0 23.00 39.81-16.81 Eufind
chrUn 467 338457156 338457084 Pseudo ??? taacaggggt gaggctgggg0 0 23.00 39.81-16.81 Eufind
chrUn 28 45108543 45108615 Pseudo ??? gagtgccgac gattggggac0 0 23.02 39.18-16.16 Eufind
chrUn 98 133582255 133582327 Pseudo ??? tgtgatgggc gaggctgggg0 0 23.37 35.54-12.17 Eufind
chrUn 664 84239885 84239813 Pseudo ??? ttggagcggc tttctgtgtg0 0 23.39 41.77-18.38 Eufind
chrUn 630 131052297 131052228 Pseudo ??? tagagtggcg ctgaggctgg0 0 23.46 21.751.71 Eufind
chrUn 523 259529404 259529332 Pseudo ??? ttcccagggt gattggggac0 0 23.54 35.34-11.80 Eufind
chrUn 106 145082392 145082464 Pseudo ??? aacccagggc gaggggactt0 0 23.97 34.47-10.50 Eufind
chrUn 135 181254145 181254217 Pseudo ??? ccacatctgc gaggctgggg0 0 23.98 32.19-8.21 Eufind
chrUn 281 325199037 325199109 Pseudo ??? caactgaggc gtgggaacgt0 0 24.25 40.66-16.41 Eufind
chrUn 266 313424278 313424350 Pseudo ??? taggaggggt gaggctgggg0 0 24.36 37.37-13.01 Eufind
chrUn 360 395275699 395275771 Pseudo ??? gcattagggc gattgaggac0 0 24.50 37.68-13.18 Eufind
chrUn 551 232354507 232354438 Pseudo ??? ttatagggca ctgaggctgg0 0 24.59 20.254.34 Eufind
chrUn 214 265612204 265612276 Pseudo ??? agaaagcagc ggtggggact0 0 24.73 33.21-8.48 Eufind
chrUn 142 187751991 187752063 Pseudo ??? agctcagggt gattggggac0 0 25.62 46.44-20.82 Eufind
chrUn 682 48645108 48645036 Pseudo ??? tactgggggc ggggactttc0 0 26.04 38.04-12.00 Eufind
chrUn 249 299557613 299557685 Pseudo ??? tcataagggt gattggggac0 0 26.16 31.97-5.81 Eufind
chrUn 585 193342094 193342022 Pseudo ??? cgttgagggc gattggggac0 0 26.16 33.25-7.09 Eufind
chrUn 101 137740915 137740987 Pseudo ??? gcggcatggt gaggctgggg0 0 26.16 40.39-14.23 Eufind
chrUn 70 98251280 98251352 Pseudo ??? ttggataggc gaggctgggg0 0 26.16 40.39-14.23 Eufind
chrUn 233 285609240 285609313 Pseudo ??? atatatatat gaggctgggg0 0 26.24 32.60-6.36 Eufind
chrUn 451 355426751 355426679 Pseudo ??? tgaaaagggc aattgggaac0 0 27.24 38.72-11.48 Eufind
chrUn 652 108403015 108402943 Pseudo ??? ctcaaagggc gattggggac0 0 27.32 40.49-13.17 Eufind
chrUn 469 329998767 329998695 Pseudo ??? gtctaggggc gggactttct0 0 27.94 36.78-8.84 Eufind
chrUn 273 321265023 321265095 Pseudo ??? caaggtgggc gaggctgggg0 0 28.48 39.65-11.17 Eufind
chrUn 665 78520753 78520681 Pseudo ??? ctgacggggc gaggctgggg0 0 28.54 33.88-5.34 Eufind
chrUn 370 399743185 399743257 Pseudo ??? taacttgggc gattggggac0 0 28.77 38.85-10.08 Eufind
chrUn 555 230409913 230409841 Pseudo ??? gtatggtggc ggttggggac0 0 28.77 38.85-10.08 Eufind
chrUn 274 322929466 322929539 Pseudo ??? aacacagggc aggctgggga0 0 28.88 30.94-2.06 Eufind
chrUn 587 189431596 189431524 Pseudo ??? cacagggggc gattggggac0 0 29.02 36.10-7.08 Eufind
chrUn 546 235720914 235720842 Pseudo ??? taaagaacat gaggggactt0 0 29.49 37.69-8.20 Eufind
chrUn 626 134938678 134938606 Pseudo ??? ctatgcgggc gaggctgggg0 0 29.93 41.70-11.77 Eufind
chrUn 552 231891857 231891785 Pseudo ??? tttacagggc gaggggactt0 0 30.16 40.24-10.08 Eufind
chrUn 25 42776443 42776514 Pseudo ??? tctggtggat gaggctgggg0 0 30.77 31.76-0.99 Eufind
chrUn 497 296051964 296051892 Pseudo ??? tatagcgggc gaggctgggg0 0 30.87 42.01-11.14 Eufind
chrUn 502 284232054 284231982 Pseudo ??? atgcacaagc gaggactttc0 0 31.17 39.02-7.85 Eufind
chrUn 637 118809155 118809083 Pseudo ??? agggaggggc ggggactttc0 0 31.22 39.26-8.04 Eufind
chrUn 232 283628988 283629060 Pseudo ??? agatttattc gattggggac0 0 31.30 34.46-3.16 Eufind
chrUn 39 75068763 75068835 Pseudo ??? ccctagtggg gaggctgggg0 0 31.77 37.17-5.40 Eufind
chrUn 116 162895377 162895449 Pseudo ??? aaataggggc gaggctgggg0 0 32.62 38.97-6.35 Eufind
chrUn 27 43843635 43843707 Pseudo ??? tggtcctggt taggctgggg0 0 32.62 41.70-9.08 Eufind
chrUn 440 363718912 363718840 Pseudo ??? ggaaggttca gaggctgggg0 0 32.62 41.70-9.08 Eufind
chrUn 621 144070100 144070028 Pseudo ??? ggaaggttca gaggctgggg0 0 32.62 41.70-9.08 Eufind
chrUn 633 125102159 125102087 Pseudo ??? atgtgggggc gattggggac0 0 32.62 41.70-9.08 Eufind
chrUn 702 23610435 23610363 Pseudo ??? caccaggggc gattggggac0 0 32.62 41.70-9.08 Eufind
chrUn 138 182095376 182095448 Pseudo ??? aaaatggggc gaggggattt0 0 32.72 39.81-7.09 Eufind
chrUn 208 263260404 263260476 Pseudo ??? gcctgtaggc gaggctgggg0 0 32.94 40.33-7.39 Eufind
chrUn 584 200526544 200526472 Pseudo ??? aacattgggc gcggctgggg0 0 32.94 40.33-7.39 Eufind
chrUn 204 256815690 256815762 Pseudo ??? tgattgtggc gattggggac0 0 33.07 40.17-7.10 Eufind
chrUn 253 302556222 302556294 Pseudo ??? tttaccgggc gattggggac0 0 33.07 40.17-7.10 Eufind
chrUn 271 317565580 317565652 Pseudo ??? cactgcgggc gattggggtc0 0 33.07 40.17-7.10 Eufind
chrUn 290 348956526 348956598 Pseudo ??? acaagagggt gattggggac0 0 33.07 40.17-7.10 Eufind
chrUn 355 392972208 392972280 Pseudo ??? gatgttgggc gattggggac0 0 33.07 40.17-7.10 Eufind
chrUn 378 398072742 398072670 Pseudo ??? gaatgtgggc gattggggac0 0 33.07 40.17-7.10 Eufind
chrUn 472 320652588 320652515 Pseudo ??? cccctaggtc attggggact0 0 33.27 35.72-2.45 Eufind
chrUn 160 207473578 207473650 Pseudo ??? aaaggggggc gattggggtc0 0 33.39 38.79-5.40 Eufind
chrUn 105 143604407 143604479 Pseudo ??? attagagggc gggactttct0 0 34.08 41.17-7.09 Eufind
chrUn 289 345935180 345935252 Pseudo ??? attcagaaac gggactttct0 0 34.24 36.37-2.13 Eufind
chrUn 55 87131808 87131880 Pseudo ??? gattatgggc gaggggactt0 0 34.46 40.58-6.12 Eufind
chrUn 658 95036687 95036615 Pseudo ??? tcactggggc gaggggactt0 0 34.46 41.55-7.09 Eufind
chrUn 114 157128392 157128464 Pseudo ??? tctaggaggt gaggggactt0 0 35.41 43.80-8.39 Eufind
chrUn 627 134260151 134260079 Pseudo ??? acaatatggc gggaatttct0 0 35.85 33.342.51 Both
chrUn 259 306724502 306724574 Pseudo ??? ccagtctggc gagcctgggg0 0 36.92 43.02-6.10 Eufind
chrUn 26 43836757 43836829 Pseudo ??? tggtcctggc gaggctgggg0 0 36.92 43.02-6.10 Eufind
chrUn 304 358691767 358691839 Pseudo ??? attgacgggc gattggggac0 0 36.92 43.02-6.10 Eufind
chrUn 313 368537842 368537914 Pseudo ??? tgtgcatggc gattggggac0 0 36.92 43.02-6.10 Eufind
chrUn 377 398590392 398590320 Pseudo ??? gatgatgggc gagcctgggg0 0 36.92 43.02-6.10 Eufind
chrUn 423 372127673 372127601 Pseudo ??? ctgcatgtgc gattggggac0 0 36.92 43.02-6.10 Eufind
chrUn 454 353097861 353097789 Pseudo ??? acctggaggt gagcctgggg0 0 36.92 43.02-6.10 Eufind
chrUn 525 258673847 258673775 Pseudo ??? attgacgggt ggggcaagtg0 0 36.92 43.02-6.10 Eufind
chrUn 553 231820808 231820736 Pseudo ??? ttaggagggt gaggctgggg0 0 36.92 43.02-6.10 Eufind
chrUn 57 87482425 87482497 Pseudo ??? attgttgggt gaggctgggg0 0 37.00 41.60-4.60 Eufind
chrUn 100 136035793 136035866 Pseudo ??? aagttctgaa gaggctgggg0 0 37.12 32.214.91 Eufind
chrUn 171 217416827 217416899 Pseudo ??? ttgagtgggt gggactttct0 0 39.76 36.902.86 Eufind
chrUn 568 215914440 215914368 Pseudo ??? agttgagggc gagggggctt0 0 41.13 43.15-2.02 Eufind
chrUn 182 238817471 238817544 Pseudo AAT ctgcagctgt tgtatttcgt0 0 28.14 23.594.55 Eufind
chrUn 169 211433296 211433358 Pseudo AGC ccagtgctct tccaggaagt0 0 25.32 4.7620.56 Eufind
chrUn 260 307158162 307158227 Pseudo CAA agtacagcaa ctctctttta0 0 23.74 7.4916.25 Eufind
chrUn 216 269897847 269897919 Pseudo CAC aagagggggc tttctgtgtg0 0 20.52 36.85-16.33 Eufind
chrUn 482 313555372 313555300 Pseudo CAC ttacgagggc gaggctgcgg0 0 29.10 41.70-12.60 Eufind
chrUn 468 334101492 334101415 Pseudo CAC tgatacgggc aggctgggga334101455 334101451 22.32 28.49-6.17 Eufind
chrUn 288 342531264 342531333 Pseudo CAT ctgttcccca gctgactttt0 0 45.17 41.014.16 Eufind
chrUn 197 240831670 240831741 Pseudo CCA gaacacatgg ttaaaggtct0 0 21.79 30.00-8.21 Eufind
chrUn 625 139068283 139068208 Pseudo CCA cactcctcgt gtgtcgctag0 0 34.58 32.651.93 Eufind
chrUn 713 7801110 7801040 Pseudo CCG tacatatgtg ttggactttt0 0 25.92 21.734.19 Eufind
chrUn 701 26048732 26048668 Pseudo CGA cattaggggc gaggctgggg0 0 26.84 25.031.81 Eufind
chrUn 559 227465912 227465841 Pseudo CTG tccaggaagt ctttttgaca0 0 38.97 38.710.26 Eufind
chrUn 619 147217131 147217073 Pseudo CTT caccactata cctcttttgc0 0 28.58 7.4821.10 Eufind
chrUn 300 354291834 354291899 Pseudo GAA catattcaga gcatgtttgg0 0 21.60 20.960.64 Eufind
chrUn 156 205724479 205724549 Pseudo GAA tgctctgccg gtgtgtgatt0 0 38.42 33.954.47 Eufind
chrUn 125 170101733 170101816 Pseudo GAG tgcacttcgt ttcttgcctg0 0 21.21 18.732.48 Eufind
chrUn 666 78301521 78301449 Pseudo GCA attttggggc gaggctgggg0 0 21.14 31.00-9.86 Both
chrUn 127 177183798 177183874 Pseudo GCC atggtagggc gaggctgggg0 0 29.40 37.75-8.35 Eufind
chrUn 381 397473032 397472956 Pseudo GCC attgtagggc gaggctgggg0 0 33.77 37.56-3.79 Eufind
chrUn 617 155394716 155394629 Pseudo GCT aggggtcaag ggctttattt0 0 36.04 8.5827.46 Both
chrUn 134 181048539 181048612 Pseudo GCT gtcctgtata tttctcttgc0 0 40.09 36.913.18 Eufind
chrUn 386 393475035 393474963 Pseudo GTC tcttaaacag aacccgacct0 0 24.65 26.81-2.16 Eufind
chrUn 410 383174111 383174039 Pseudo GTT gactcagtgt ttggtttgaa0 0 25.43 30.25-4.82 Eufind
chrUn 411 383173512 383173440 Pseudo GTT gactcagtgt ttggtttgaa0 0 25.43 30.25-4.82 Eufind
chrUn 379 397981166 397981094 Pseudo GTT gactcagtgt tggtttgaag0 0 25.91 25.170.74 Eufind
chrUn 133 181046390 181046463 Pseudo GTT ctatatacag tttctcttgt0 0 30.31 30.020.29 Eufind
chrUn 516 264516312 264516240 Pseudo TAA aggtcattgt tgtgattcct0 0 43.65 38.804.85 Eufind
chrUn 99 134967292 134967360 Pseudo TAC tacagtacga aggggtttgt0 0 20.69 33.20-12.51 Eufind
chrUn 538 240628551 240628480 Pseudo TCC ttgggggcaa aaaaacattt0 0 21.22 21.40-0.18 Eufind
chrM 2 9540 9610 Pseudo TCC aggctcataa atgaacttac0 0 26.87 -5.1131.98 tRNAscan
chrUn 307 358826675 358826745 Pseudo TCC aggctcataa atgaacttac0 0 26.87 -5.1131.98 tRNAscan
chrUn 533 251430316 251430245 Pseudo TGG tttgggttgc ttcttaatac0 0 32.27 34.06-1.79 Eufind
chrUn 353 391849736 391849807 Pseudo TTC gatccagtgt ttggttagaa0 0 20.88 30.68-9.80 Eufind
chrUn 341 389969839 389969910 Pseudo TTG gtttcacaga tctttattct0 0 23.68 33.28-9.60 Eufind
chrM 5 3945 3875 Pseudo TTG ctgactttac ggagctggag0 0 36.50 8.3728.13 Eufind
chrUn 449 358820889 358820819 Pseudo TTG ctgactttac ggagctggag0 0 36.50 8.3728.13 Eufind
chrUn 202 251433733 251433801 Pseudo TTT gtctacatgt tcttttaatg0 0 23.64 20.053.59 Eufind
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chrUn 690 33898576 33898491 SeC(e) TCA tagaggaagt gatgaccttc0 0 69.50 0.000.00 Eufind
 
chrUn 188 239053147 239053228 Ser AGA atcaccagta tttgttttta0 0 72.20 49.3422.86 Both
chrUn 184 239050359 239050440 Ser AGA agtaccagta tatgttttta0 0 72.27 46.9525.32 Both
chrUn 189 239053679 239053760 Ser AGA atcacaagta tatgttttta0 0 79.64 51.7327.91 Both
chrUn 109 153105338 153105419 Ser AGA ttgtcggtgt atgctgcagg0 0 86.44 54.9631.48 Both
chrUn 192 239134127 239134208 Ser AGA tgtcacatct cttcaacctt0 0 87.69 56.2231.47 Both
chrUn 542 239186540 239186459 Ser AGA ggtttaacag tctgaaattt0 0 87.69 56.2231.47 Both
chrUn 190 239130164 239130245 Ser AGA cgaatgctgc ttcttcaaat0 0 88.95 58.2530.70 Both
chrUn 191 239132440 239132521 Ser AGA tacagaacag tcctctgatc0 0 88.95 58.2530.70 Both
chrUn 199 242820203 242820284 Ser AGA tagctatcgg catcttttta0 0 88.95 58.2530.70 Both
chrUn 234 286813985 286814066 Ser AGA gacgcatata cataactttt0 0 88.95 58.2530.70 Both
chrUn 263 309347655 309347736 Ser AGA aggcaacacg caagttcgct0 0 88.95 58.2530.70 Both
chrUn 657 95628716 95628635 Ser CGA gtaacctaca tggtcttctt0 0 84.33 51.5232.81 Both
chrUn 210 263797493 263797574 Ser CGA ggaaaacgta tttttgtcct0 0 84.60 58.9625.64 Both
chrUn 193 239150466 239150547 Ser CGA gaacaatcgt acctaatttt0 0 88.23 59.2528.98 Both
chrUn 646 114169599 114169522 Ser GCT tgcagcatac ctgttttaca0 0 36.35 31.045.31 Eufind
chrUn 650 114163340 114163267 Ser GCT caggccacaa cactttcccg0 0 55.19 35.9519.24 Eufind
chrUn 503 283030912 283030831 Ser GCT aacattagcg gtttctctaa0 0 58.41 37.4220.99 Eufind
chrUn 407 385389667 385389591 Ser GCT caggccacaa cactttcccg0 0 58.58 39.8318.75 Eufind
chrUn 649 114164248 114164167 Ser GCT gcgcacacaa cagttttttc0 0 76.06 51.7524.31 Both
chrUn 648 114165058 114164977 Ser GCT tcagccacaa cgcttttccg0 0 78.91 53.6325.28 Both
chrUn 406 385393504 385393423 Ser GCT gcagccacaa tgcttttccg0 0 81.28 53.7027.58 Both
chrUn 647 114168683 114168602 Ser GCT cagggcacaa cacttttcca0 0 81.46 50.9230.54 Both
chrUn 405 385394315 385394234 Ser GCT cagggcacaa cacttttccg0 0 82.89 55.3227.57 Both
chrUn 164 211137641 211137722 Ser GCT tgtgcaaggc tttttaaaaa0 0 85.34 57.7727.57 Both
chrUn 195 240621414 240621495 Ser GCT aggttagcaa gtcggccctt0 0 85.34 57.7727.57 Both
chrUn 3 4105471 4105552 Ser GCT cggccactag aattgcgttt0 0 85.34 57.7727.57 Both
chrUn 496 298272460 298272379 Ser GCT gtagtcgccc gagttcttta0 0 85.34 57.7727.57 Both
chrUn 527 257999489 257999408 Ser GCT cgtgtcaatt cttttcattt0 0 85.34 57.7727.57 Both
chrUn 700 26998469 26998388 Ser GCT acagctggcg atttgtttat0 0 85.34 57.7727.57 Both
chrUn 705 17984329 17984248 Ser GCT gcgtgcacag cacttttcct0 0 85.34 57.7727.57 Both
chrUn 541 239189121 239189040 Ser TGA acagcttcag tttgaatctg0 0 32.99 16.9616.03 Both
chrM 4 7066 6996 Ser TGA gagtcttatg gatagaggtt0 0 41.16 20.1421.02 Both
chrUn 448 358824201 358824131 Ser TGA gagtcttatg gatagaggtt0 0 41.16 20.1421.02 Both
chrUn 186 239052101 239052182 Ser TGA cactgaagta tatgttttta0 0 68.20 47.9320.27 Both
chrUn 187 239052624 239052705 Ser TGA atcaccagta tatgttttta0 0 72.44 49.5822.86 Both
chrUn 653 106677200 106677119 Ser TGA accagtatca atggatcatt0 0 84.88 52.2332.65 Both
chrUn 230 281658484 281658565 Ser TGA acgttaaggt ttggtttttg0 0 88.33 56.7631.57 Both
chrUn 238 292039553 292039634 Ser TGA cgccctcaca ttcgcctttt0 0 89.16 62.7526.41 Both
 
chrUn 711 10053549 10053481 Thr AGT gtttttccgt tttcagcaag0 0 53.84 40.1213.72 Eufind
chrUn 550 232642689 232642616 Thr AGT gcccctttgt aattgttggc0 0 54.30 40.3713.93 Eufind
chrUn 276 323192014 323192087 Thr AGT ctgttgtcgt ctgtcctttt0 0 71.11 48.5322.58 Both
chrUn 414 380831250 380831177 Thr AGT ctgttgtcgt ctgtccttct0 0 71.11 48.5322.58 Both
chrUn 543 237753729 237753656 Thr AGT gcgcatacgt ttcttaatac0 0 71.78 54.6617.12 Both
chrUn 588 189292699 189292626 Thr AGT ttgtttctgt taagaccctt0 0 72.48 55.4117.07 Both
chrUn 412 380832117 380832044 Thr AGT ctgttgtcgt ctgtccgaga0 0 72.85 50.2722.58 Both
chrUn 415 380830898 380830825 Thr AGT aaatttctgt ctgtcctttt0 0 74.65 54.3120.34 Both
chrUn 416 380830544 380830471 Thr AGT aaatttctgt ctgtcctttt0 0 74.65 54.3120.34 Both
chrUn 235 287439190 287439263 Thr AGT cagacactgt ctgaggtgtg0 0 77.83 52.9024.93 Both
chrUn 689 36229779 36229706 Thr AGT ggctgccaca ttgtaccttt0 0 77.94 57.6020.34 Both
chrUn 141 187617174 187617247 Thr AGT gccgctatct tttgatttag0 0 82.80 62.4120.39 Both
chrUn 148 192546495 192546568 Thr AGT agccatcgga tttaacataa0 0 82.80 62.4120.39 Both
chrUn 149 192552500 192552573 Thr AGT agccatcgga tttaacataa0 0 82.80 62.4120.39 Both
chrUn 609 166978246 166978173 Thr AGT gtcgaagcgc tttaataact0 0 82.80 62.4120.39 Both
chrUn 172 218311115 218311188 Thr AGT gcacttcatc tttgtttgcg0 0 84.06 64.4519.61 Both
chrUn 610 165373768 165373695 Thr AGT ttgcatcaat tcggtataag0 0 84.06 64.4519.61 Both
chrUn 622 142306074 142306001 Thr AGT tacatcatcc tttgcgcttc0 0 84.06 64.4519.61 Both
chrUn 572 214158885 214158812 Thr CGT caacaggtgt ctagtatttt0 0 63.76 44.0719.69 Both
chrUn 604 181547358 181547287 Thr CGT tcagaaggca tgaatggaaa0 0 74.16 47.5726.59 Both
chrUn 670 71184647 71184575 Thr CGT tgtgaaaatg ttttattctt0 0 74.20 53.7020.50 Both
chrUn 616 155736639 155736566 Thr CGT ttatgtatgt gatttatagc0 0 79.53 56.8422.69 Both
chrUn 241 296746992 296747063 Thr CGT ggatgtgcca tggggcgtgt0 0 79.77 59.8819.89 Both
chrUn 681 48899003 48898932 Thr CGT gaacagcgca tttggagact0 0 79.77 59.8819.89 Both
chrUn 305 358815980 358816051 Thr TGT aaactaacaa caaaaagaag0 0 45.72 23.3422.38 tRNAscan
chrM 3 15485 15556 Thr TGT aaactaacaa caaaaagaag0 0 47.37 24.9922.38 tRNAscan
chrUn 76 109546992 109547064 Thr TGT gtctaacagc cttttcttga0 0 78.15 51.8226.33 Both
chrUn 459 348222516 348222444 Thr TGT caggcagcgc caccttcact0 0 79.46 56.9222.54 Both
chrUn 77 109549833 109549905 Thr TGT cgggcctcgc tccttttttt0 0 80.28 55.5924.69 Both
chrUn 603 184383677 184383605 Thr TGT taccaggtga accagtatct0 0 81.27 59.0822.19 Both
chrUn 712 8504520 8504448 Thr TGT cccaagtgaa ggcattttgg0 0 81.27 59.0822.19 Both
chrUn 540 239868395 239868323 Thr TGT aatggatgcg tgcagtggtt0 0 83.03 60.4922.54 Both
 
chrUn 404 386366888 386366816 Trp CCA aatgtctgtt ctggtttcac0 0 24.87 17.417.46 Eufind
chrUn 563 223962053 223961981 Trp CCA aatgtctgtt ctggtttcac0 0 24.87 17.417.46 Eufind
chrUn 173 223967888 223967960 Trp CCA aatgtctgtt ctggtttcac0 0 31.57 17.8413.73 Eufind
chrUn 537 240832694 240832623 Trp CCA ctttctgact tttaacttta0 0 56.88 37.9418.94 Eufind
chrUn 261 307177358 307177429 Trp CCA aagaaccagg tcagctttag0 0 62.13 44.6917.44 Both
chrUn 499 293288278 293288207 Trp CCA ctctattaac agctgtatgt0 0 70.40 50.0720.33 Both
chrUn 575 210012638 210012567 Trp CCA accagagcga agctctccag0 0 70.98 55.0615.92 Both
chrUn 180 234239314 234239385 Trp CCA acagcgcggc agcggtgttt0 0 73.39 53.5219.87 Both
chrUn 327 379800235 379800306 Trp CCA acagcgcggc agcggtgttt0 0 73.39 53.5219.87 Both
chrUn 151 198932532 198932603 Trp CCA ctcatccatg tttgttttca0 0 74.00 52.2121.79 Both
chrUn 254 303551435 303551506 Trp CCA catagtccga agtttttttc0 0 74.00 52.2121.79 Both
chrUn 325 375852550 375852621 Trp CCA ctcatccatg tttgttttca0 0 74.00 52.2121.79 Both
chrUn 420 374885642 374885571 Trp CCA ctcatccatg tttgttttca0 0 74.00 52.2121.79 Both
chrUn 470 327321363 327321292 Trp CCA acatcatcaa atttattgca0 0 74.00 52.2121.79 Both
chrUn 489 301847944 301847873 Trp CCA gtcgttaaca gtctgacact0 0 74.00 52.2121.79 Both
chrUn 623 142260877 142260806 Trp CCA cggcggcaca aactattttg0 0 74.00 52.2121.79 Both
chrUn 485 307187686 307187615 Trp CCA aaacgtagct ttggcttttt0 0 75.20 52.6222.58 Both
chrUn 262 307182741 307182812 Trp CCA tttgttacag atgaattttg0 0 77.64 53.0624.58 Both
 
chrUn 340 389969573 389969644 Tyr ATA gggaagtggt ctttttgaca0 0 64.59 45.0019.59 Both
chrUn 710 10999789 10999703 Tyr GTA gttcagtgtc gacttaattt10999752 10999739 76.08 49.6726.41 Both
chrUn 107 149974743 149974830 Tyr GTA agcagcactt gagatttttc149974780 149974794 75.10 48.6926.41 Both
chrUn 611 163399393 163399307 Tyr GTA tgctgccgtc gactttattt163399356 163399343 63.33 43.7019.63 Both
chrUn 136 181568262 181568348 Tyr GTA aggaagtaag aaacttttgt181568299 181568312 36.85 28.917.94 Both
chrUn 137 181582610 181582697 Tyr GTA aggcgccaga attctttttt181582647 181582661 73.69 47.2826.41 Both
chrUn 215 268527966 268528051 Tyr GTA gtaactataa catttttaag268528003 268528015 74.86 48.4526.41 Both
chrUn 217 270700759 270700845 Tyr GTA tgttcagcat aggccttttg270700795 270700809 68.96 46.2622.70 Both
chrUn 514 270701465 270701379 Tyr GTA tgttcagcat aggctttttg270701429 270701415 72.18 45.7726.41 Both
chrUn 218 270702029 270702116 Tyr GTA cactacggcg gaattttttg270702065 270702080 71.03 44.6226.41 Both
chrUn 17 30061102 30061189 Tyr GTA gagcagccgc gtgagttttt30061139 30061153 74.96 48.5526.41 Both
chrUn 695 30061504 30061417 Tyr GTA gcactacgga tacattttct30061467 30061453 74.06 47.6526.41 Both
chrUn 314 370449836 370449921 Tyr GTA gctcgtcgag cacttttgca370449873 370449885 74.71 48.3026.41 Both
chrUn 317 371184361 371184446 Tyr GTA gtaagcataa catttttaac371184398 371184410 75.63 49.2226.41 Both
chrUn 715 5835940 5835855 Tyr GTA aaaaaaatat cttccatttt5835903 5835891 69.20 40.9328.27 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chrUn 161 207709018 207709092 Undet ??? ccttcacacg tcatgcctta0 0 26.58 20.795.79 Eufind
chrUn 351 391437968 391438041 Undet ??? caaattgttc ctgagcctgg0 0 27.97 17.6510.32 Eufind
chrUn 422 372665900 372665827 Undet ??? caaattgttc ctgagcctgg0 0 27.97 17.6510.32 Eufind
chrUn 430 369631455 369631382 Undet ??? caaattgttc ctgagcctgg0 0 27.97 17.6510.32 Eufind
chrUn 450 358632556 358632483 Undet ??? caaattgttc ctgagcctgg0 0 27.97 17.6510.32 Eufind
chrUn 687 43162244 43162170 Undet ??? ttagattgga tgaggctggg0 0 28.05 22.645.41 Eufind
chrUn 561 227453362 227453298 Undet ??? gtagagctgt tctttttttt0 0 29.01 14.5614.45 Eufind
chrUn 491 299772714 299772650 Undet ??? agttcattcc ctttattaat0 0 37.22 19.8217.40 Eufind
chrUn 185 239051721 239051784 Undet ??? acctgaagta ttcgttttta0 0 40.08 22.7617.32 Eufind
chrUn 387 390839489 390839426 Undet ??? gttcattcac ctttattaat0 0 45.46 24.7920.67 Eufind
 
chrUn 643 114489270 114489198 Val AAC tcagcttcaa aaagtttttg0 0 56.82 36.9819.84 Eufind
chrUn 444 362475395 362475325 Val AAC nnnnnnnnnn cacttattgg0 0 65.86 46.9918.87 Eufind
chrUn 644 114489074 114489002 Val AAC ctggcttcaa aaagtatttg0 0 72.17 42.1330.04 tRNAscan
chrUn 642 114489443 114489371 Val AAC ttggcttcaa aaagtatttg0 0 77.32 43.4433.88 tRNAscan
chrUn 641 114490661 114490589 Val AAC tcggcttcaa aaagtatttg0 0 78.03 44.1533.88 tRNAscan
chrUn 365 396372564 396372636 Val AAC ccctcacctg cttatgggtt0 0 79.81 60.8818.93 Eufind
chrUn 337 388161240 388161312 Val AAC cccacacccg cttgttggtt0 0 85.14 59.9525.19 Both
chrUn 358 395221178 395221250 Val AAC cactcacctg cttattggtt0 0 85.14 59.9525.19 Both
chrUn 389 390836853 390836781 Val AAC ccctcacccg cttatttgtt0 0 85.14 59.9525.19 Both
chrUn 462 343022040 343021968 Val AAC ccctcacccg cttatttgtt0 0 85.14 59.9525.19 Both
chrUn 479 316500123 316500051 Val AAC gtagcgtatc tggcttcttt0 0 85.93 59.9725.96 Both
chrUn 480 316498817 316498745 Val AAC cacgtggcag cgtttctttt0 0 85.93 59.9725.96 Both
chrUn 645 114488431 114488359 Val AAC tcggcacgaa attgtttgtt0 0 85.93 59.9725.96 Both
chrUn 688 41444917 41444845 Val AAC gacgtcatgg tagcttttct0 0 85.93 59.9725.96 Both
chrUn 220 271442430 271442502 Val AAC cccgtaccca cgttttgata0 0 86.79 61.6025.19 Both
chrUn 10 20834920 20834997 Val CAC agttttaggc aggccaccat0 0 39.76 26.4313.33 Eufind
chrUn 85 114535642 114535714 Val CAC ctagtgtagc cctttagtta0 0 56.44 47.878.57 Eufind
chrUn 434 365579518 365579450 Val CAC ttagctaaca tcatgattac0 0 60.71 44.6516.06 Both
chrUn 640 114490838 114490766 Val CAC atgcgagcaa aaagtatttg0 0 64.29 35.4528.84 Eufind
chrUn 357 395220463 395220535 Val CAC nnnnnnnnnn cttattggtt0 0 67.97 52.4015.57 Eufind
chrUn 369 398376074 398376146 Val CAC ccctcacccg cttttgcaac0 0 79.49 54.2925.20 Both
chrUn 335 388159268 388159340 Val CAC ctctcacctg cttattggct0 0 83.03 62.5720.46 Both
chrUn 255 303556900 303556972 Val CAC ttcgccaccc cacttttctt0 0 87.39 62.2025.19 Both
chrUn 321 374047294 374047366 Val CAC ggcccctcac ctttattaat0 0 87.39 62.2025.19 Both
chrUn 322 374053696 374053768 Val CAC ggcctctcat ctttattaat0 0 87.39 62.2025.19 Both
chrUn 334 387108545 387108617 Val CAC ctctcacctg cttattggct0 0 87.39 62.2025.19 Both
chrUn 336 388160111 388160183 Val CAC ccctcacccg cttactggtt0 0 87.39 62.2025.19 Both
chrUn 338 388890355 388890427 Val CAC ctagtgtagc ctttcagttt0 0 87.39 62.2025.19 Both
chrUn 356 393062379 393062451 Val CAC ctggaatact ctttttagtg0 0 87.39 62.2025.19 Both
chrUn 363 396371029 396371101 Val CAC ggcctctcat ctttattaat0 0 87.39 62.2025.19 Both
chrUn 368 398374374 398374446 Val CAC ccctcacctg cttactggtt0 0 87.39 62.2025.19 Both
chrUn 384 393998708 393998636 Val CAC ctctcacctg cttattggct0 0 87.39 62.2025.19 Both
chrUn 388 390837834 390837762 Val CAC ccctcacctg cttattggtt0 0 87.39 62.2025.19 Both
chrUn 441 362482541 362482469 Val CAC ggcccctcac ctttattaat0 0 87.39 62.2025.19 Both
chrUn 443 362476447 362476375 Val CAC tcctcacctg cttattggtt0 0 87.39 62.2025.19 Both
chrUn 461 343022896 343022824 Val CAC tcctcacctg cttattggtt0 0 87.39 62.2025.19 Both
chrUn 493 299767759 299767687 Val CAC gggccctcac ctttattaat0 0 87.39 62.2025.19 Both
chrUn 631 128731072 128731000 Val CAC ttaaccacag cttcttttaa0 0 87.39 62.2025.19 Both
chrUn 639 114578233 114578161 Val CAC tctagtagtt cttttatgtg0 0 87.39 62.2025.19 Both
chrUn 376 399006807 399006735 Val TAC ggtctatcat cttgacagct0 0 27.37 22.165.21 Eufind
chrUn 517 264515938 264515866 Val TAC ttgttggtgt gataactcaa0 0 69.33 49.0920.24 Both
chrUn 130 178591656 178591728 Val TAC ttttatatct gtcttttgtg0 0 75.61 55.8119.80 Both
chrUn 589 188881534 188881462 Val TAC ggcctccagt tgtatatttt0 0 78.19 56.0722.12 Both
chrUn 221 271713715 271713787 Val TAC tcaacagcat gagttcctcc0 0 78.50 53.5025.00 Both
chrUn 222 271718123 271718195 Val TAC tcaacagcat gagttcctcc0 0 80.23 55.2424.99 Both
chrUn 291 349934182 349934254 Val TAC tcaacagcat gagttcctcc0 0 80.23 55.2424.99 Both
chrUn 206 257777329 257777401 Val TAC tttcgtctta gcttttcctt0 0 82.67 57.6325.04 Both
chrUn 458 352052778 352052706 Val TAC ttacacatcc gtcttttctc0 0 82.67 57.6325.04 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.