GtRNAdb

tRNAscan-SE Analysis of Gallus gallus (galGal4 Nov 2011)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA278
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs279


Intron Summary

tRNAs with introns
22
Arg
TCT
2
Leu
CAA
3
Ile
TAT
2
Tyr
GTA
15


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
23
GGC
 
CGC
4
TGC
7
34
GlyACC
 
GCC
8
CCC
4
TCC
7
19
ProAGG
7
GGG
 
CGG
3
TGG
4
14
ThrAGT
4
GGT
 
CGT
2
TGT
4
10
ValAAC
7
GAC
1
CAC
7
TAC
3
18

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
8
GGA
 
CGA
2
TGA
4
ACT
 
GCT
7
 
 
 
 
21
ArgACG
8
GCG
 
CCG
2
TCG
2
 
 
 
 
CCT
3
TCT
4
19
LeuAAG
3
GAG
 
CAG
7
TAG
2
 
 
 
 
CAA
3
TAA
2
17

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
9
 
 
 
 
9
AsnATT
 
GTT
11
 
 
 
 
11
Lys 
 
 
 
CTT
6
TTT
6
12
AspATC
 
GTC
9
 
 
 
 
9
Glu 
 
 
 
CTC
7
TTC
9
16
HisATG
1
GTG
7
 
 
 
 
8
Gln 
 
 
 
CTG
5
TTG
2
7

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
7
GAT
 
 
 
TAT
2
9
Met 
 
 
 
CAT
14
 
 
14
TyrATA
 
GTA
15
 
 
 
 
15
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
10
 
 
 
 
10
Trp 
 
 
 
CCA
6
 
 
6
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.