GtRNAdb

tRNAscan-SE Analysis of Glycine max (soybean) (Wm82.a2)

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> Genome DB
>> Genome Seq
tRNA Gene Summary




tRNAs Decoding Standard 20 AA738
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs738


Intron Summary

tRNAs with introns
39
Ser
TGA
1
Met
CAT
18
Tyr
GTA
20


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
24
GGC
 
CGC
8
TGC
17
49
GlyACC
 
GCC
29
CCC
9
TCC
18
56
ProAGG
21
GGG
 
CGG
5
TGG
27
53
ThrAGT
9
GGT
1
CGT
4
TGT
10
24
ValAAC
22
GAC
1
CAC
13
TAC
9
45

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
15
GGA
 
CGA
6
TGA
11
ACT
 
GCT
28
 
 
 
 
60
ArgACG
13
GCG
 
CCG
5
TCG
9
 
 
 
 
CCT
13
TCT
18
58
LeuAAG
16
GAG
 
CAG
7
TAG
10
 
 
 
 
CAA
18
TAA
9
60

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
22
 
 
 
 
22
AsnATT
2
GTT
22
 
 
 
 
24
Lys 
 
 
 
CTT
22
TTT
20
42
AspATC
 
GTC
33
 
 
 
 
33
Glu 
 
 
 
CTC
24
TTC
16
40
HisATG
 
GTG
18
 
 
 
 
18
Gln 
 
 
 
CTG
13
TTG
13
26

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
31
GAT
 
 
 
TAT
8
39
Met 
 
 
 
CAT
36
 
 
36
TyrATA
 
GTA
21
 
 
 
 
21
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
14
 
 
 
 
14
Trp 
 
 
 
CCA
18
 
 
18
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.